8821 CHD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8821 chr_11a CHD 619890 621834 - CHD

Synonyms

NCBI ID Ensembl Genomes exon ID
7444475 Thaps8821.2, Thaps8821.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0137

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

11664

DUF3510
0.9031

263810

PTZ00430
0.9009

10963

hypothetical protein
0.9003

4525

hypothetical protein
0.8997

4333

hypothetical protein
0.8965

3837

UshA
0.8916

3842

hypothetical protein
0.8907

3161

hypothetical protein
0.8889

21429

hypothetical protein
0.8855

263219

MFS_1
0.8854

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 168.912 8.32E-49 447 - 625 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 168.912 8.32E-49 447 - 625 superfamily 264492
CYCc Adenylyl- / guanylyl cyclase, catalytic domain; Present in two copies in mammalian adenylyl... - 150.1 5.78E-42 438 - 603 multi-dom 214485

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 GO:0004016 GO:0008294 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0009190

cyclic nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
GO Category: 
BP

GO:0016849

phosphorus-oxygen lyase activity

Details: 
Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
GO Category: 
MF

GO:0004016

adenylate cyclase activity

Details: 
Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate.
GO Category: 
MF

GO:0008294

calcium- and calmodulin-responsive adenylate cyclase activity

Details: 
Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate, stimulated by calcium-bound calmodulin.
GO Category: 
MF

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