9127 SmcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9127	chr_12	Smc	598236	604103	+	Smc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445844	Thaps9127.5, Thaps9127.2, Thaps9127.1, Thaps9127.7, Thaps9127.6, Thaps9127.3, Thaps9127.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0334

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0251	0.43	0.004 0.046

Most Highly Correlated Transcripts

21190 SAC3_GANP 0.8962	21568 hypothetical protein 0.8909	24604 hypothetical protein 0.8906	24141 FH2 superfamily 0.8795	10753 hypothetical protein 0.8748	11929 hypothetical protein 0.8722
22621 hypothetical protein 0.8719	6720 hypothetical protein 0.8715	9790 hypothetical protein 0.8708	22477 hypothetical protein 0.8703

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Smc		Chromosome segregation ATPases [Cell division and chromosome partitioning]	-	80.1435	3.44E-15	10 - 789	multi-dom	224117

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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