9711 MCMThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9711	chr_14	MCM	159809	163546	+	MCM

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451639	Thaps9711.2, Thaps9711.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0373

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0003	0.47	11000 2

Most Highly Correlated Transcripts

bd1161 (bd1161) NA 0.8793	32840 Motor_domain superfamily 0.8697	269439 hypothetical protein 0.8692	264577 lysozyme_like superfamily 0.8669	32564 KISc 0.8666	262854 CBS_pair superfamily 0.8653
11434 hypothetical protein 0.8614	261027 class_II_aaRS-like_core superfamily 0.8604	263947 SNF2_N 0.8577	33984 PKc_like superfamily 0.8541

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MCM_N superfamily		MCM N-terminal domain; This family contains the N-terminal region of MCM proteins. This region is...	-	98.828	8.08E-24	401 - 541	superfamily	258689
MCM_N superfamily		MCM N-terminal domain; This family contains the N-terminal region of MCM proteins. This region is...	-	98.828	8.08E-24	401 - 541	superfamily	258689
MCM		minichromosome maintenance proteins; minichromosome maintenance proteins.	-	653.56	0	524 - 1078	multi-dom	214631

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments