9963 ATS1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9963 chr_14 ATS1 849203 855902 + ATS1

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0334

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0065
 0.48

Most Highly Correlated Transcripts

586

PTZ00018
0.8783

5321

CobN-Mg_chel superfamily
0.8641

262607

WD40 superfamily
0.8621

5779

hypothetical protein
0.8588

4959

hypothetical protein
0.8552

15246

NhaP
0.8538

5777

PRO8NT
0.8529

992

hypothetical protein
0.8525

2941

hypothetical protein
0.8514

37376

(MYO6) MYSc
0.8497

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome... - 119.943 1.81E-28 1006 - 1370 multi-dom 227511

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 258714 Not available Not available Not available Not available 497265

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008766 GO:0016881 GO:0018169 -

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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