997 PLN02342
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
997 chr_1 PLN02342 384253 385532 - PLN02342

Synonyms

NCBI ID Ensembl Genomes exon ID
7447621 Thaps997.2, Thaps997.1, Thaps997.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0212

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0131
 0.35

Most Highly Correlated Transcripts

268908

Trans_IPPS_HH
0.8548

32321

TRX_family
0.8512

36235

p450 superfamily
0.8497

36037

Trypsin_2
0.8493

16295

FBPase
0.8451

21978

hypothetical protein
0.8442

21941

hypothetical protein
0.844

31535

cyclophilin_ABH_like
0.8406

9247

hypothetical protein
0.8405

22497

hypothetical protein
0.8399

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
OTCace_N superfamily Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine... - 174.665 2.11E-53 41 - 188 superfamily 251498
OTCace_N superfamily Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine... - 174.665 2.11E-53 41 - 188 superfamily 251498
OTCace superfamily Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Aspartate/ornithine... - 168.135 1.02E-50 193 - 346 superfamily 249663
OTCace superfamily Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Aspartate/ornithine... - 168.135 1.02E-50 193 - 346 superfamily 249663
PLN02342 ornithine carbamoyltransferase - 562.489 0 1 - 351 multi-dom 177976

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30514 PHATRDRAFT_30514 268473 213068 236460 Cre12.g489700.t1.2 AT1G75330.1 317226

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004070 GO:0006207 GO:0004585 GO:0006520 GO:0009348 GO:0016597 GO:0016743 -

GO:0004070

aspartate carbamoyltransferase activity

Details: 
Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate.
GO Category: 
MF

GO:0006207

'de novo' pyrimidine nucleobase biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
GO Category: 
BP

GO:0004585

ornithine carbamoyltransferase activity

Details: 
Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline.
GO Category: 
MF

GO:0006520

cellular amino acid metabolic process

Details: 
The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
GO Category: 
BP

GO:0009348

ornithine carbamoyltransferase complex

Details: 
A homotrimeric protein complex that catalyzes the transfer of a carbamoyl group to ornithine, forming citrulline.
GO Category: 
CC

GO:0016597

amino acid binding

Details: 
Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO Category: 
MF

GO:0016743

carboxyl- or carbamoyltransferase activity

Details: 
Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

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