bd1396 (bd1396) rpl19Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1396	bd_26x41	(bd1396) rpl19	59081	59443	+	rpl19

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0062

Most Highly Correlated Transcripts

ThpsCp004 (rpl19) ribosomal protein L19 1	bd977 (bd977) rps14 0.9677	ThpsCp045 (rps14) ribosomal protein S14 0.9677	ThpsCp044 (psaM) photosystem I reaction center subunit M 0.9386	ThpsCp061 (ycf90) hypothetical protein 0.8977	bd1676 (bd1676) RPS2 0.8858
ThpsCp031 (rps2) ribosomal protein S2 0.8816	bd93 (bd93) NA 0.872	bd1435 (bd1435) ycf3 0.864	ThpsCp038 (ycf3) photosystem I assembly protein Ycf3 0.864

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
rpl19		ribosomal protein L19	cl00406	188.215	3.04E-62	3 - 119	specific	177023
Ribosomal_L19 superfamily		Ribosomal protein L19; Ribosomal protein L19.	-	188.215	3.04E-62	3 - 119	superfamily	241844

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre17.g734450.t1.2	AT4G17560.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments