bd1736 (bd1736) Photo_RC superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1736	bd_27x41	(bd1736) Photo_RC superfamily	1	746	+	Photo_RC superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0275

Most Highly Correlated Transcripts

ThpsCp085 (psbA) photosystem II protein D1 0.9064	ThpsCp131 (psbA) photosystem II protein D1 0.9064	bd1611 (bd1611) psaB 0.8563	5499 hypothetical protein 0.8369	ThpsCp002 (psaB) photosystem I P700 chlorophyll a apoprotein A2 0.8109	ThpsCr002 (rnl) 0.8021
ThpsCr005 (rnl') 0.8021	35984 hypothetical protein 0.7962	36738 PT_UbiA_COQ2 0.7952	263299 hypothetical protein 0.7952

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Photo_RC superfamily		D1, D2 subunits of photosystem II (PSII); M, L subunits of bacterial photosynthetic reaction...	-	338.451	9.75E-117	1 - 179	superfamily	263538

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	229821	Not available	Not available	ATCG00020.1	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

Not available -

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