bd1891 (bd1891) COG3899Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1891	bd_24x33	(bd1891) COG3899	4623	9977	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0304

Most Highly Correlated Transcripts

36605 SufE superfamily 0.9596	36649 SufE superfamily 0.9596	11019 hypothetical protein 0.9541	3979 hypothetical protein 0.9516	24011 hypothetical protein 0.938	25553 hypothetical protein 0.93
5770 hypothetical protein 0.9278	25423 hypothetical protein 0.921	268064 (Tp_HSF_2.7d) HSF_DNA-bind superfamily 0.9205	23962 hypothetical protein 0.9174

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	64.7913	1.03E-11	564 - 728	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	64.7913	1.03E-11	564 - 728	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	217.651	1.72E-58	565 - 1269	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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