PHATRDRAFT_15019 rrna methylase family protein (SpoU)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_15019 chr_17 rrna methylase family protein (SpoU) 563407 564045 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0141

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0230
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. cl17307 117.61 4.47E-33 49 - 204 specific 249983
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 117.61 4.47E-33 49 - 204 superfamily 266618
SpoU_sub_bind RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O... cl06870 32.8932 0.00954015 1 - 27 specific 214943
SpoU_sub_bind superfamily RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O... - 32.8932 0.00954015 1 - 27 superfamily 263082
SpoU rRNA methylases [Translation, ribosomal structure and biogenesis] - 159.759 7.16E-48 1 - 208 multi-dom 223640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
264345 Not available 178319 260885 54726 Cre13.g566150.t1.2 AT2G19870.1 418960

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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