PHATRDRAFT_42571 (UCH)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42571 chr_1 (UCH) 466346 470958 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0156

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0070
 0.42

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... cl02553 144.163 8.70E-38 956 - 1314 specific 239072
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 144.163 8.70E-38 956 - 1314 superfamily 261337
ACT_6 ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains. cl09141 56.7606 1.16E-09 243 - 316 specific 205914
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 42.8225 4.82E-05 341 - 421 superfamily 263730
Mpv17_PMP22 superfamily Mpv17 / PMP22 family; The 22-kDa peroxisomal membrane protein (PMP22) is a major component of... - 53.0032 2.04E-08 148 - 201 superfamily 252388
Mpv17_PMP22 superfamily Mpv17 / PMP22 family; The 22-kDa peroxisomal membrane protein (PMP22) is a major component of... - 53.0032 2.04E-08 148 - 201 superfamily 252388
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 42.8225 4.82E-05 341 - 421 superfamily 263730
UCH Ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase. - 169.126 8.39E-46 955 - 1314 multi-dom 249862
GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] - 72.4078 2.95E-14 243 - 404 multi-dom 225337

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
21956 Not available 255265 254171 111890 Cre02.g115150.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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