Phatr_bicluster_0070 Residual: 0.42
Phaeodactylum tricornutum

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Phatr_bicluster_0070 0.42 Phaeodactylum tricornutum
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Displaying 1 - 48 of 48
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PHATRDRAFT_28237 structural maintenance of chromosome protein (ABC_ATPase superfamily)

PHATRDRAFT_28237 - structural maintenance of chromosome protein (ABC_ATPase superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_28237
PHATRDRAFT_32984

PHATRDRAFT_32984 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_32984
PHATRDRAFT_33106

PHATRDRAFT_33106 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_33106
PHATRDRAFT_33589

PHATRDRAFT_33589 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_33589
PHATRDRAFT_36276

PHATRDRAFT_36276 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_36276
PHATRDRAFT_37405

PHATRDRAFT_37405 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37405
PHATRDRAFT_37726 keratinocytes proline-rich protein

PHATRDRAFT_37726 - keratinocytes proline-rich protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37726
PHATRDRAFT_37779 6-phosphofructo-2-kinase fructose-- (ANK)

PHATRDRAFT_37779 - 6-phosphofructo-2-kinase fructose-- (ANK)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37779
PHATRDRAFT_38585

PHATRDRAFT_38585 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38585
PHATRDRAFT_39221

PHATRDRAFT_39221 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39221
PHATRDRAFT_39232

PHATRDRAFT_39232 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39232
PHATRDRAFT_39364

PHATRDRAFT_39364 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39364
PHATRDRAFT_39557 (Rhamno_transf superfamily)

PHATRDRAFT_39557 - (Rhamno_transf superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39557
PHATRDRAFT_39601 ankyrin repeat domain protein (ANK)

PHATRDRAFT_39601 - ankyrin repeat domain protein (ANK)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39601
PHATRDRAFT_40672 triblock protein copolymer cssc

PHATRDRAFT_40672 - triblock protein copolymer cssc

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40672
PHATRDRAFT_41575

PHATRDRAFT_41575 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41575
PHATRDRAFT_41581

PHATRDRAFT_41581 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41581
PHATRDRAFT_41593

PHATRDRAFT_41593 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41593
PHATRDRAFT_42538 aquaporin (MIP superfamily)

PHATRDRAFT_42538 - aquaporin (MIP superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_42538
PHATRDRAFT_42571 (UCH)

PHATRDRAFT_42571 - (UCH)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_42571
PHATRDRAFT_43378 (CHD)

PHATRDRAFT_43378 - (CHD)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_43378
PHATRDRAFT_43410

PHATRDRAFT_43410 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_43410
PHATRDRAFT_43494 cna b domain protein

PHATRDRAFT_43494 - cna b domain protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_43494
PHATRDRAFT_43495 thrombospondin type 3 repeat:cna b-type

PHATRDRAFT_43495 - thrombospondin type 3 repeat:cna b-type

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_43495
PHATRDRAFT_44441 (PLN00113)

PHATRDRAFT_44441 - (PLN00113)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44441
PHATRDRAFT_44537 glycosyltransferase-like 1b (Glyco_transf_49 superfamily)

PHATRDRAFT_44537 - glycosyltransferase-like 1b (Glyco_transf_49 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44537
PHATRDRAFT_44648

PHATRDRAFT_44648 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44648
PHATRDRAFT_44982 (hot_dog superfamily)

PHATRDRAFT_44982 - (hot_dog superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44982
PHATRDRAFT_45027

PHATRDRAFT_45027 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_45027
PHATRDRAFT_45721

PHATRDRAFT_45721 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_45721
PHATRDRAFT_45740

PHATRDRAFT_45740 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_45740
PHATRDRAFT_46239

PHATRDRAFT_46239 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46239
PHATRDRAFT_46559 ipt tig domain containing protein

PHATRDRAFT_46559 - ipt tig domain containing protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46559
PHATRDRAFT_46821

PHATRDRAFT_46821 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46821
PHATRDRAFT_46822

PHATRDRAFT_46822 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46822
PHATRDRAFT_46928 nadph oxidaseisoform cra_c (NOX_Duox_like_FAD_NADP)

PHATRDRAFT_46928 - nadph oxidaseisoform cra_c (NOX_Duox_like_FAD_NADP)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46928
PHATRDRAFT_47260

PHATRDRAFT_47260 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47260
PHATRDRAFT_47337 (Nucleotid_trans superfamily)

PHATRDRAFT_47337 - (Nucleotid_trans superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47337
PHATRDRAFT_47753 ring finger protein (RING)

PHATRDRAFT_47753 - ring finger protein (RING)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47753
PHATRDRAFT_48565 pt repeat family protein

PHATRDRAFT_48565 - pt repeat family protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48565
PHATRDRAFT_48715

PHATRDRAFT_48715 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48715
PHATRDRAFT_49275 abc transporter related

PHATRDRAFT_49275 - abc transporter related

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49275
PHATRDRAFT_49858

PHATRDRAFT_49858 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49858
PHATRDRAFT_49862

PHATRDRAFT_49862 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49862
PHATRDRAFT_49937 rhogap protein

PHATRDRAFT_49937 - rhogap protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49937
PHATRDRAFT_54178 mdc1_macmumediator of dna damage checkpoint protein 1 (PHA03247)

PHATRDRAFT_54178 - mdc1_macmumediator of dna damage checkpoint protein 1 (PHA03247)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_54178
PHATRDRAFT_54883

PHATRDRAFT_54883 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_54883
PHATRDRAFT_54907

PHATRDRAFT_54907 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_54907
GO ID Go Term p-value q-value Cluster
GO:0051276 chromosome organization and biogenesis 0.0118065 1 Phatr_bicluster_0070
GO:0009190 cyclic nucleotide biosynthesis 0.049301 1 Phatr_bicluster_0070
GO:0000160 two-component signal transduction system (phosphorelay) 0.0744898 1 Phatr_bicluster_0070
GO:0007242 intracellular signaling cascade 0.117765 1 Phatr_bicluster_0070
GO:0006511 ubiquitin-dependent protein catabolism 0.125669 1 Phatr_bicluster_0070
GO:0006355 regulation of transcription, DNA-dependent 0.134605 1 Phatr_bicluster_0070
GO:0016567 protein ubiquitination 0.193944 1 Phatr_bicluster_0070
GO:0006810 transport 0.440472 1 Phatr_bicluster_0070
GO:0006508 proteolysis and peptidolysis 0.495352 1 Phatr_bicluster_0070
GO:0006118 electron transport 0.503223 1 Phatr_bicluster_0070
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