PHATRDRAFT_44618 2-isopropylmalate synthase (PLN02321)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44618	chr_4	2-isopropylmalate synthase (PLN02321)	1065041	1067032	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0140

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0098	0.29	990 110

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DRE_TIM_IPMS		2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; 2-isopropylmalate...	cl18962	469.237	4.23E-162	92 - 377	specific	163678
DRE_TIM_metallolyase superfamily		DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate...	-	469.237	4.23E-162	92 - 377	superfamily	267315
LeuA_dimer		LeuA allosteric (dimerisation) domain; This is the C-terminal regulatory (R) domain of alpha-...	cl07212	121.052	4.78E-32	481 - 626	specific	214910
LeuA_dimer superfamily		LeuA allosteric (dimerization) domain; This is the C-terminal regulatory (R) domain of alpha-...	-	121.052	4.78E-32	481 - 626	superfamily	263229
PLN02321		2-isopropylmalate synthase	-	1059.58	0	4 - 648	multi-dom	215182

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
13393		Not available	277320	236620	427029	Cre06.g258733.t2.1	AT1G18500.1	552331

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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