PHATRDRAFT_51283 splicing factorsubunit 4 (RRM2_SF3B4)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_51283 chr_29 splicing factorsubunit 4 (RRM2_SF3B4) 258347 259333 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0457

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0002
 0.43

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM2_SF3B4 RNA recognition motif 2 in splicing factor 3B subunit 4 (SF3B4) and similar proteins; This... cl17169 143.589 1.72E-42 104 - 187 specific 240781
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 128.866 5.41E-37 16 - 89 superfamily 266524
RRM1_SF3B4 RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins; This... cl17169 128.866 5.41E-37 16 - 89 specific 240780
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 128.866 5.41E-37 16 - 89 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
15972 Not available 204730 191542 437029 Cre06.g254800.t1.2 AT2G18510.1 484926

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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