Phatr_bicluster_0002 Residual: 0.43
Phaeodactylum tricornutum

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Phatr_bicluster_0002 0.43 Phaeodactylum tricornutum
Displaying 1 - 78 of 78
PHATRDRAFT_13856 solute carrier family 25 (carnitine acylcarnitine translocase)member 20 (Mito_carr)

PHATRDRAFT_13856 - solute carrier family 25 (carnitine acylcarnitine translocase)member 20 (Mito_carr)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_13856
PHATRDRAFT_14607 pms2 postmeiotic segregation incre (mutl)

PHATRDRAFT_14607 - pms2 postmeiotic segregation incre (mutl)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_14607
PHATRDRAFT_14735 qs (quinolinate synthase) quinolinate synthetase a (NadA superfamily)

PHATRDRAFT_14735 - qs (quinolinate synthase) quinolinate synthetase a (NadA superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_14735
PHATRDRAFT_15160 dynactin 25 kda subunit (LbetaH superfamily)

PHATRDRAFT_15160 - dynactin 25 kda subunit (LbetaH superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_15160
PHATRDRAFT_16991 uric acid-xanthine permease (Sulfate_transp superfamily)

PHATRDRAFT_16991 - uric acid-xanthine permease (Sulfate_transp superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_16991
PHATRDRAFT_21791 novel protein (ArfGap)

PHATRDRAFT_21791 - novel protein (ArfGap)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_21791
PHATRDRAFT_22554 alg2 protein (Glycosyltransferase_GTB_type superfamily)

PHATRDRAFT_22554 - alg2 protein (Glycosyltransferase_GTB_type superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_22554
PHATRDRAFT_22568 glycolate oxidase (FMN_dh)

PHATRDRAFT_22568 - glycolate oxidase (FMN_dh)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_22568
PHATRDRAFT_23723 at3g05290 t12h1_26 (Mito_carr)

PHATRDRAFT_23723 - at3g05290 t12h1_26 (Mito_carr)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_23723
PHATRDRAFT_2394 cysteinyl-trna synthetase family protein (nt_trans superfamily)

PHATRDRAFT_2394 - cysteinyl-trna synthetase family protein (nt_trans superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_2394
PHATRDRAFT_2739 leucine-rich repeat transmembrane protein

PHATRDRAFT_2739 - leucine-rich repeat transmembrane protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_2739
PHATRDRAFT_2936 ubiquitin carboxyl-terminal hydrolase family protein (UCH)

PHATRDRAFT_2936 - ubiquitin carboxyl-terminal hydrolase family protein (UCH)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_2936
PHATRDRAFT_30638 gpi-anchor transamidase precursor (Peptidase_C13 superfamily)

PHATRDRAFT_30638 - gpi-anchor transamidase precursor (Peptidase_C13 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_30638
PHATRDRAFT_33251 conserved hypothetical

PHATRDRAFT_33251 - conserved hypothetical

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_33251
PHATRDRAFT_33624 matrix metalloproteinase (Peptidase_M11 superfamily)

PHATRDRAFT_33624 - matrix metalloproteinase (Peptidase_M11 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_33624
PHATRDRAFT_37038 taurine catabolism dioxygenase (CAS_like superfamily)

PHATRDRAFT_37038 - taurine catabolism dioxygenase (CAS_like superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37038
PHATRDRAFT_37404 copia protein (gag-int-pol protein)

PHATRDRAFT_37404 - copia protein (gag-int-pol protein)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37404
PHATRDRAFT_37459 probable hydrolase (HAD superfamily)

PHATRDRAFT_37459 - probable hydrolase (HAD superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37459
PHATRDRAFT_37827

PHATRDRAFT_37827 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37827
PHATRDRAFT_38403

PHATRDRAFT_38403 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38403
PHATRDRAFT_38429

PHATRDRAFT_38429 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38429
PHATRDRAFT_38848 xpg i-region familyexpressed (PIN_SF superfamily)

PHATRDRAFT_38848 - xpg i-region familyexpressed (PIN_SF superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38848
PHATRDRAFT_38978

PHATRDRAFT_38978 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38978
PHATRDRAFT_39081 pas pac sensor hybrid histidine kinase (HATPase_c)

PHATRDRAFT_39081 - pas pac sensor hybrid histidine kinase (HATPase_c)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39081
PHATRDRAFT_39546

PHATRDRAFT_39546 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39546
PHATRDRAFT_39576

PHATRDRAFT_39576 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39576
PHATRDRAFT_39610

PHATRDRAFT_39610 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39610
PHATRDRAFT_39727 at4g32140 f10n7_50 (RhaT)

PHATRDRAFT_39727 - at4g32140 f10n7_50 (RhaT)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39727
PHATRDRAFT_39996

PHATRDRAFT_39996 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39996
PHATRDRAFT_40023 core 1 udp-galactose:n-acetylgalactosamine-alpha-r beta- galactosy

PHATRDRAFT_40023 - core 1 udp-galactose:n-acetylgalactosamine-alpha-r beta- galactosy

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40023
PHATRDRAFT_40381

PHATRDRAFT_40381 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40381
PHATRDRAFT_40474

PHATRDRAFT_40474 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40474
PHATRDRAFT_40550

PHATRDRAFT_40550 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40550
PHATRDRAFT_40610

PHATRDRAFT_40610 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40610
PHATRDRAFT_40722

PHATRDRAFT_40722 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40722
PHATRDRAFT_40760

PHATRDRAFT_40760 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40760
PHATRDRAFT_41489

PHATRDRAFT_41489 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41489
PHATRDRAFT_41584

PHATRDRAFT_41584 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41584
PHATRDRAFT_41620

PHATRDRAFT_41620 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41620
PHATRDRAFT_42585 zinc finger in n-recognin family protein (zf-UBR)

PHATRDRAFT_42585 - zinc finger in n-recognin family protein (zf-UBR)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_42585
PHATRDRAFT_43830 (Vps35 superfamily)

PHATRDRAFT_43830 - (Vps35 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_43830
PHATRDRAFT_44021 potassium channel (Ion_trans_2)

PHATRDRAFT_44021 - potassium channel (Ion_trans_2)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44021
PHATRDRAFT_44169

PHATRDRAFT_44169 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44169
PHATRDRAFT_44206

PHATRDRAFT_44206 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44206
PHATRDRAFT_46971 xpg-like endonuclease cg10670-pa (PIN_SF superfamily)

PHATRDRAFT_46971 - xpg-like endonuclease cg10670-pa (PIN_SF superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46971
PHATRDRAFT_47252

PHATRDRAFT_47252 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47252
PHATRDRAFT_47583 short-chain dehydrogenase reductase sdr (SDR_c)

PHATRDRAFT_47583 - short-chain dehydrogenase reductase sdr (SDR_c)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47583
PHATRDRAFT_47796

PHATRDRAFT_47796 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47796
PHATRDRAFT_47798 flavin-containing monooxygenase

PHATRDRAFT_47798 - flavin-containing monooxygenase

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47798
PHATRDRAFT_47833

PHATRDRAFT_47833 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47833
PHATRDRAFT_48021

PHATRDRAFT_48021 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48021
PHATRDRAFT_48289 dna helicase (DEXDc)

PHATRDRAFT_48289 - dna helicase (DEXDc)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48289
PHATRDRAFT_48335

PHATRDRAFT_48335 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48335
PHATRDRAFT_48393 2-oxoglutarate dehydrogenase e3 component (dihydrolipoamide dehydrogenase) (Lpd)

PHATRDRAFT_48393 - 2-oxoglutarate dehydrogenase e3 component (dihydrolipoamide dehydrogenase) (Lpd)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48393
PHATRDRAFT_48422

PHATRDRAFT_48422 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48422
PHATRDRAFT_48525 zinc finger (zf-DHHC)

PHATRDRAFT_48525 - zinc finger (zf-DHHC)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48525
PHATRDRAFT_48581

PHATRDRAFT_48581 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48581
PHATRDRAFT_48605

PHATRDRAFT_48605 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48605
PHATRDRAFT_48645 pyridoxamine 5-phosphate oxidase-fmn-binding (Pyridox_oxidase)

PHATRDRAFT_48645 - pyridoxamine 5-phosphate oxidase-fmn-binding (Pyridox_oxidase)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48645
PHATRDRAFT_48667 heat shock factor 6 (HSF_DNA-bind superfamily)

PHATRDRAFT_48667 - heat shock factor 6 (HSF_DNA-bind superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48667
PHATRDRAFT_48752 (SfsA superfamily)

PHATRDRAFT_48752 - (SfsA superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48752
PHATRDRAFT_49072

PHATRDRAFT_49072 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49072
PHATRDRAFT_49198 (Sec7_N superfamily)

PHATRDRAFT_49198 - (Sec7_N superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49198
PHATRDRAFT_49612

PHATRDRAFT_49612 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49612
PHATRDRAFT_49902 asparagine synthase (glutamine-hydrolyzing) or related prot (Asn_Synthase_B_C)

PHATRDRAFT_49902 - asparagine synthase (glutamine-hydrolyzing) or related prot (Asn_Synthase_B_C)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49902
PHATRDRAFT_49934 hyperpolarization-cyclic nucleotide-gated potassium channel 3

PHATRDRAFT_49934 - hyperpolarization-cyclic nucleotide-gated potassium channel 3

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49934
PHATRDRAFT_50003

PHATRDRAFT_50003 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50003
PHATRDRAFT_50093

PHATRDRAFT_50093 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50093
PHATRDRAFT_50142

PHATRDRAFT_50142 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50142
PHATRDRAFT_50274 dna polymerase epsilon subunit 2 isoform 1 (DNA_pol_E_B)

PHATRDRAFT_50274 - dna polymerase epsilon subunit 2 isoform 1 (DNA_pol_E_B)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50274
PHATRDRAFT_50359

PHATRDRAFT_50359 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50359
PHATRDRAFT_50401 glutamyl-trnaamidotransferase subunit a (GGCT_like superfamily)

PHATRDRAFT_50401 - glutamyl-trnaamidotransferase subunit a (GGCT_like superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50401
PHATRDRAFT_51283 splicing factorsubunit 4 (RRM2_SF3B4)

PHATRDRAFT_51283 - splicing factorsubunit 4 (RRM2_SF3B4)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_51283
PHATRDRAFT_52547 protein kinase (S_TKc)

PHATRDRAFT_52547 - protein kinase (S_TKc)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_52547
PHATRDRAFT_54879

PHATRDRAFT_54879 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_54879
PHATRDRAFT_7181

PHATRDRAFT_7181 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_7181
PHATRDRAFT_7959 myb-like dna-binding domain containing protein (SANT)

PHATRDRAFT_7959 - myb-like dna-binding domain containing protein (SANT)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_7959
PHATRDRAFT_8524 loc494751 protein

PHATRDRAFT_8524 - loc494751 protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_8524
GO ID Go Term p-value q-value Cluster
GO:0051336 regulation of hydrolase activity 0.000631938 1 Phatr_bicluster_0002
GO:0006423 cysteinyl-tRNA aminoacylation 0.0198767 1 Phatr_bicluster_0002
GO:0006281 DNA repair 0.0210699 1 Phatr_bicluster_0002
GO:0006529 asparagine biosynthesis 0.0264173 1 Phatr_bicluster_0002
GO:0006289 nucleotide-excision repair 0.0329159 1 Phatr_bicluster_0002
GO:0006298 mismatch repair 0.0393727 1 Phatr_bicluster_0002
GO:0043087 regulation of GTPase activity 0.0710389 1 Phatr_bicluster_0002
GO:0006813 potassium ion transport 0.125523 1 Phatr_bicluster_0002
GO:0006810 transport 0.132184 1 Phatr_bicluster_0002
GO:0006260 DNA replication 0.160121 1 Phatr_bicluster_0002
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