PHATRDRAFT_52678 (POLBc_epsilon)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_52678 chr_27 (POLBc_epsilon) 304071 310884 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0096

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0236
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type... cl10023 1099.65 0 456 - 1069 specific 99918
POLBc superfamily DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding... - 1099.65 0 456 - 1069 superfamily 245235
DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B... cl10012 371.978 1.67E-117 192 - 396 specific 99822
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 371.978 1.67E-117 192 - 396 superfamily 263941
DUF1744 superfamily Domain of unknown function (DUF1744); This domain is found on the epsilon catalytic subunit of DNA... - 233.742 1.12E-66 1468 - 1835 superfamily 254829
PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] - 370.602 2.02E-109 21 - 1081 multi-dom 223494

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268553 Not available 165693 298741 106805 Cre03.g179961.t1.1 AT1G08260.1 310598

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments