PHATRDRAFT_54435 Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_54435	chr_7		575532	576236	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0405

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0088	0.33	0.011 18000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PAS superfamily		PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising...	-	34.9164	0.00318565	85 - 187	superfamily	238075
PAS superfamily		PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising...	-	34.9164	0.00318565	85 - 187	superfamily	238075
PAS_9		PAS domain; PAS domain.	-	40.0591	4.75E-05	85 - 188	multi-dom	257751

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
23208		Not available	175232	228145	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments