PHATRDRAFT_54801 (Clathrin)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54801 chr_15 (Clathrin) 76617 82353 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0186

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0191
 0.33

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Clathrin Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... cl19570 77.2654 5.85E-16 683 - 814 specific 250019
Clathrin superfamily Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... - 77.2654 5.85E-16 683 - 814 superfamily 267923
Clathrin_H_link superfamily Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly... - 106.106 1.09E-26 355 - 419 superfamily 258113
Clathrin_H_link superfamily Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly... - 106.106 1.09E-26 355 - 419 superfamily 258113
Clathrin Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... cl19570 77.2654 5.85E-16 683 - 814 specific 250019
Clathrin superfamily Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... - 77.2654 5.85E-16 683 - 814 superfamily 267923
Clathrin Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... cl19570 77.2654 5.85E-16 683 - 814 specific 250019
Clathrin superfamily Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... - 77.2654 5.85E-16 683 - 814 superfamily 267923
CLH Clathrin heavy chain repeat homology; Clathrin heavy chain repeat homology. cl19570 79.6255 9.34E-17 975 - 1130 specific 128594
Clathrin superfamily Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... - 77.2654 5.85E-16 683 - 814 superfamily 267923

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269540 Not available 262284 216560 466469 Cre02.g101400.t1.2 AT3G08530.1 350735

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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