Phatr_bicluster_0191 Residual: 0.33
Phaeodactylum tricornutum

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Phatr_bicluster_0191 0.33 Phaeodactylum tricornutum
Displaying 1 - 23 of 23
PHATRDRAFT_26190 vacuolar-type h+-translocating inorganic pyrophosphatase (hppA)

PHATRDRAFT_26190 - vacuolar-type h+-translocating inorganic pyrophosphatase (hppA)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_26190
PHATRDRAFT_31492 dglb_human sn1-specific diacylglycerol lipase beta (dgl-beta) (Lipase_3)

PHATRDRAFT_31492 - dglb_human sn1-specific diacylglycerol lipase beta (dgl-beta) (Lipase_3)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_31492
PHATRDRAFT_32390 phosphoglycerate mutase (HP_PGM_like)

PHATRDRAFT_32390 - phosphoglycerate mutase (HP_PGM_like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_32390
PHATRDRAFT_34976 glutathione s-transferase m3 (GST_C_family superfamily)

PHATRDRAFT_34976 - glutathione s-transferase m3 (GST_C_family superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_34976
PHATRDRAFT_35589 alpha beta hydrolase (DUF676)

PHATRDRAFT_35589 - alpha beta hydrolase (DUF676)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_35589
PHATRDRAFT_36394

PHATRDRAFT_36394 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_36394
PHATRDRAFT_41063 phosphoglycerate mutase (HP_PGM_like)

PHATRDRAFT_41063 - phosphoglycerate mutase (HP_PGM_like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41063
PHATRDRAFT_41518 methyltransferase protein

PHATRDRAFT_41518 - methyltransferase protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41518
PHATRDRAFT_42611

PHATRDRAFT_42611 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_42611
PHATRDRAFT_42854 zincdhhc domain containing 3 (zf-DHHC)

PHATRDRAFT_42854 - zincdhhc domain containing 3 (zf-DHHC)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_42854
PHATRDRAFT_43541 esterase lipase thioesterase family protein (LPLAT superfamily)

PHATRDRAFT_43541 - esterase lipase thioesterase family protein (LPLAT superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_43541
PHATRDRAFT_44117 asparagine-linked glycosylation 6 homolog (alpha--glucosyltransferase) (Alg6_Alg8 superfamily)

PHATRDRAFT_44117 - asparagine-linked glycosylation 6 homolog (alpha--glucosyltransferase) (Alg6_Alg8 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44117
PHATRDRAFT_44530

PHATRDRAFT_44530 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44530
PHATRDRAFT_46618 (HTTM superfamily)

PHATRDRAFT_46618 - (HTTM superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46618
PHATRDRAFT_46711

PHATRDRAFT_46711 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46711
PHATRDRAFT_48313 (SET)

PHATRDRAFT_48313 - (SET)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48313
PHATRDRAFT_48731 oligopeptidase a

PHATRDRAFT_48731 - oligopeptidase a

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48731
PHATRDRAFT_50493 (H15)

PHATRDRAFT_50493 - (H15)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50493
PHATRDRAFT_51560 17 beta-hydroxysteroid dehydrogenase typehsd17b3 (NADB_Rossmann superfamily)

PHATRDRAFT_51560 - 17 beta-hydroxysteroid dehydrogenase typehsd17b3 (NADB_Rossmann superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_51560
PHATRDRAFT_54417 (STAG superfamily)

PHATRDRAFT_54417 - (STAG superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_54417
PHATRDRAFT_54801 (Clathrin)

PHATRDRAFT_54801 - (Clathrin)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_54801
PHATRDRAFT_54901 tbc1d20 protein (RabGAP-TBC superfamily)

PHATRDRAFT_54901 - tbc1d20 protein (RabGAP-TBC superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_54901

PHATRDRAFT_9724 - udp-n-acetylglucosamine-dolichyl-phosphate n-acetylglucosaminephosphotransferase (GT_GPT_euk)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_9724
GO ID Go Term p-value q-value Cluster
GO:0006629 lipid metabolism 0.000185223 0.425272 Phatr_bicluster_0191
GO:0015992 proton transport 0.0171775 1 Phatr_bicluster_0191
GO:0006334 nucleosome assembly 0.019612 1 Phatr_bicluster_0191
GO:0008152 metabolism 0.314154 1 Phatr_bicluster_0191
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