10198 rRNA_methylase superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10198	chr_15	rRNA_methylase superfamily	578497	580387	+	rRNA_methylase superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442105	Thaps10198.2, Thaps10198.1, Thaps10198.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0454

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0049	0.45	15 3100

Most Highly Correlated Transcripts

8643 hypothetical protein 0.8641	269624 TIM_phosphate_binding superfamily 0.8612	24947 zf-DHHC 0.852	16295 FBPase 0.852	7978 Cation_efflux superfamily 0.8474	3287 hypothetical protein 0.8474
4022 hypothetical protein 0.8462	4501 EMP24_GP25L 0.8461	22822 NTF2 0.8454	262559 (RAB11a) Rab11_like 0.8443

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
rRNA_methylase superfamily		Putative rRNA methylase; This family contains a number of putative rRNA methylases. Note that many...	-	68.0323	1.53E-13	279 - 391	superfamily	253991

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42440	PHATRDRAFT_42440	Not available	Not available	Not available	Not available	AT1G16445.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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