22822 NTF2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22822 chr_5 NTF2 1585479 1586165 + NTF2

Synonyms

NCBI ID Ensembl Genomes exon ID
7445179 Thaps22822.2, Thaps22822.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0181

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0120
 0.39

Most Highly Correlated Transcripts

270222

0.9097

6383

PTZ00162
0.8926

1819

hypothetical protein
0.8905

35116

SF3b10
0.8871

36330

(RpbY) RNAP_II_RPB11
0.8862

7942

hypothetical protein
0.8833

2988

hypothetical protein
0.88

6686

hypothetical protein
0.8799

3071

NA
0.8758

2946

UMP_CMP_kin_fam
0.8756

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of... cl09109 106.983 1.71E-30 2 - 119 specific 238403
NTF2_like superfamily Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family... - 106.983 1.71E-30 2 - 119 superfamily 263720

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15688 PHATRDRAFT_15688 267101 321590 430104 Cre07.g316000.t1.2 AT1G27970.1 286573

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005622 GO:0005634 GO:0006606 GO:0008565 -

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006606

protein import into nucleus

Details: 
The directed movement of a protein from the cytoplasm to the nucleus.
GO Category: 
BP

GO:0008565

protein transporter activity

Details: 
Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO Category: 
MF

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