11401 TIM_phosphate_binding superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11401	chr_19c_29	TIM_phosphate_binding superfamily	275694	277808	+	TIM_phosphate_binding superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451859	Thaps11401.4, Thaps11401.5, Thaps11401.2, Thaps11401.1, Thaps11401.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0354

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0007	0.40	0.00084 2400

Most Highly Correlated Transcripts

4108 hypothetical protein 0.8509	bd933 (bd933) NA 0.803	bd938 (bd938) PBP2_NikA_DppA_OppA_like superfamily 0.7872	bd1875 (bd1875) NA 0.7716	bd630 (bd630) NA 0.7593	bd930 (bd930) HA 0.7557
bd1237 (bd1237) 3a01204 0.7545	bd196 (bd196) Snf7 superfamily 0.7528	bd1877 (bd1877) NA 0.7442	7239 hypothetical protein 0.7397

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TIM_phosphate_binding superfamily		TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an...	-	72.516	1.34E-14	68 - 445	superfamily	266538

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50353	PHATRDRAFT_50353	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments