16136 PrfA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16136 chr_5 PrfA 605196 606848 - PrfA

Synonyms

NCBI ID Ensembl Genomes exon ID
7451780 Thaps16136.1, Thaps16136.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0319

Most Highly Correlated Transcripts

bd1949

(bd1949) NA
0.9366

bd1777

(bd1777) NA
0.888

268443

SAICAR_synt_Sc
0.8761

bd446

(bd446) HrpA
0.8725

20696

S_TKc
0.8657

2116

DUF1336 superfamily
0.8642

5101

UbiE
0.8587

2622

hypothetical protein
0.8568

23500

crypto_DASH
0.8563

bd687

(bd687) NA
0.8517

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RF-1 RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a... cl17422 177.761 1.81E-53 350 - 454 specific 249886
RF-1 superfamily RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a... - 177.761 1.81E-53 350 - 454 superfamily 266672
PCRF PCRF domain; This domain is found in peptide chain release factors. cl17745 87.2014 1.64E-20 200 - 312 specific 251973
PCRF superfamily PCRF domain; This domain is found in peptide chain release factors. - 87.2014 1.64E-20 200 - 312 superfamily 266807
PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] - 348.815 9.70E-116 118 - 469 multi-dom 223294

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23862 PHATRDRAFT_23862 188648 33172 Not available Not available Not available 301424

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003747 GO:0006415 GO:0004045 -

GO:0003747

translation release factor activity

Details: 
Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
GO Category: 
MF

GO:0006415

translational termination

Details: 
The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO Category: 
BP

GO:0004045

aminoacyl-tRNA hydrolase activity

Details: 
Catalysis of the reaction: N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA.
GO Category: 
MF

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