bd446 (bd446) HrpA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd446 bd_20x5 (bd446) HrpA 32412 35389 + HrpA

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0068

Most Highly Correlated Transcripts

40925

(RPB21) PRK08565
0.9685

260758

TFCD_C
0.9594

21124

hypothetical protein
0.9577

261179

Myotub-related
0.9563

4455

hypothetical protein
0.9556

264129

COG1026
0.9542

24049

hypothetical protein
0.953

22167

hypothetical protein
0.9488

22292

Smc
0.9473

25144

hypothetical protein
0.9438

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 84.6964 6.46E-19 63 - 202 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 84.6964 6.46E-19 63 - 202 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 69.574 6.69E-14 279 - 422 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 69.574 6.69E-14 279 - 422 superfamily 238034
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 66.4719 3.81E-13 480 - 572 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 66.4719 3.81E-13 480 - 572 superfamily 262181
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 63.471 6.02E-12 610 - 741 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 63.471 6.02E-12 610 - 741 superfamily 254381
HrpA HrpA-like helicases [DNA replication, recombination, and repair] - 443.685 1.96E-142 25 - 787 multi-dom 224557

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41167 PHATRDRAFT_41167 177877 265034 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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