2084 (H3) PLN00160
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2084 chr_2 (H3) PLN00160 124966 125694 - PLN00160

Synonyms

NCBI ID Ensembl Genomes exon ID
7452163 Thaps2084.1, Thaps2084.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0427

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0007
 0.40

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.8446

35136

NA
0.8414

35907

Prp18
0.8393

37497

cysE
0.8362

263665

(RT17) rpsQ
0.826

37118

FeThRed_B
0.8219

22673

NA
0.8204

24921

HA
0.8181

37549

Ribosomal_S18
0.8165

9321

Sm_D3
0.8152

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00160 histone H3; Provisional cl00074 172.154 1.75E-55 70 - 166 specific 165727
H4 superfamily Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic... - 172.154 1.75E-55 70 - 166 superfamily 260174

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16843 PHATRDRAFT_16843 174718 288248 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments