2222 COG2319Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2222	chr_2	COG2319	478630	481790	+	COG2319

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448663	Thaps2222.2, Thaps2222.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0412

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0023	0.43

Most Highly Correlated Transcripts

4108 hypothetical protein 0.8684	8288 hypothetical protein 0.8525	268862 PLN03076 0.8471	5630 Vps51 0.8393	5595 hypothetical protein 0.8313	25669 EEP superfamily 0.8292
22882 PUB 0.8279	8686 hypothetical protein 0.8176	263381 lacZ 0.8163	13556 BglC 0.8144

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	69.286	6.51E-13	557 - 884	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	79.7475	9.48E-16	517 - 952	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42443	PHATRDRAFT_42443	146131	182088	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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