22319 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22319 chr_4 WD40 superfamily 1391081 1393682 - WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448820 Thaps22319.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0407

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0035
 0.44

Most Highly Correlated Transcripts

9491

hypothetical protein
0.9055

1943

(Tp_HSF_2.6e) HSF_DNA-bind superfamily
0.8941

12836

EEP superfamily
0.8787

10191

SUL1
0.8651

21893

CysPc
0.8627

22265

hypothetical protein
0.8618

27813

Hid1 superfamily
0.856

1275

hypothetical protein
0.8548

12183

hypothetical protein
0.8545

26702

ATPase-Plipid
0.853

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 120.903 4.95E-30 79 - 368 superfamily 238121
PUL superfamily PUL domain; The PUL (PLAP, Ufd3p and Lub1p) domain is a novel alpha-helical Ub-associated domain.... - 95.1289 1.41E-21 562 - 803 superfamily 254729
PFU superfamily PFU (PLAA family ubiquitin binding); This domain is found N terminal to pfam08324 and binds to... - 91.1377 2.34E-21 419 - 523 superfamily 255162
COG2319 FOG: WD40 repeat [General function prediction only] - 96.3111 3.86E-21 28 - 368 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42625 PHATRDRAFT_42625 183642 250736 Not available Cre09.g389912.t1.1 AT3G18860.1 345470

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

Not available -

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