24632 PDCD2_C superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
24632 chr_13 PDCD2_C superfamily 340451 344628 + PDCD2_C superfamily
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221
Normalized Mean Residue
Thaps_bicluster_0186
0.38
(bd1945) NA
0.9287
(bd621) NA
0.8731
(TopoII_2) PLN03128
0.8654
UPF0066
0.8616
Glyco_transf_22 superfamily
0.8611
hypothetical protein
0.8607
(Tp_AP2-EREBP9) regulator [Rayko]
0.8573
AAA_12
0.8568
hypothetical protein
0.8554
MFS
0.8549
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PDCD2_C superfamily Programmed cell death protein 2, C-terminal putative domain; Programmed cell death protein 2, C-... - 77.0566 5.26E-16 850 - 1055 superfamily 252443
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_55067 PHATRDRAFT_55067 258246 304706 Not available Not available Not available 298276
KEGG description KEGG Pathway
Not available Not available
GO:0003910 GO:0005524 GO:0006260 GO:0006281 GO:0006310 -

DNA ligase (ATP) activity

Details: 
Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

DNA recombination

Details: 
Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO Category: 
BP
Log in to post comments