263644 (TopoII_2) PLN03128
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
263644 chr_10 (TopoII_2) PLN03128 349705 353872 + PLN03128
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230
Normalized Mean Residue
Thaps_bicluster_0184
0.33
AAA_12
0.8963
HrpA
0.8956
Peptidase_C19
0.892
hypothetical protein
0.8906
UvrD
0.8867
(Tp_AP2-EREBP9) regulator [Rayko]
0.886
SXM1
0.8818
hypothetical protein
0.8768
hypothetical protein
0.8717
obgE
0.8694
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type... cl02783 173.242 3.70E-49 363 - 522 specific 239563
TopoII_MutL_Trans superfamily MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-... - 173.242 3.70E-49 363 - 522 superfamily 261445
TOP4c superfamily DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC... - 384.226 1.50E-120 823 - 1283 superfamily 238111
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 206.767 1.70E-61 565 - 688 superfamily 260587
PLN03128 DNA topoisomerase 2; Provisional - 1859.76 0 110 - 1288 multi-dom 215593
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003677 GO:0003918 GO:0005524 GO:0006259 GO:0006265 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

DNA topoisomerase type II (ATP-hydrolyzing) activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP

DNA topological change

Details: 
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO Category: 
BP
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