262619 Spc97_Spc98
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262619 chr_5 Spc97_Spc98 1866641 1871546 + Spc97_Spc98

Synonyms

NCBI ID Ensembl Genomes exon ID
7444867 Thaps262619.1, Thaps262619.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0153

Most Highly Correlated Transcripts

21220

KU superfamily
0.9248

23467

hypothetical protein
0.9182

10894

hypothetical protein
0.9164

12836

EEP superfamily
0.9164

34590

nt_trans superfamily
0.9141

22603

COG3899
0.914

3408

FANCL_C superfamily
0.9107

25318

AAT_I superfamily
0.9095

22128

DENN
0.909

10223

hypothetical protein
0.909

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Spc97_Spc98 superfamily Spc97 / Spc98 family; The spindle pole body (SPB) functions as the microtubule-organizing centre in... - 333.704 1.78E-100 901 - 1478 superfamily 252397
Spc97_Spc98 superfamily Spc97 / Spc98 family; The spindle pole body (SPB) functions as the microtubule-organizing centre in... - 333.704 1.78E-100 901 - 1478 superfamily 252397

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47314 PHATRDRAFT_47314 207014 183312 Not available Cre12.g525500.t1.1 AT5G17410.1 470864

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000226 GO:0000922 GO:0005815 GO:0004222 GO:0004249 GO:0008133 GO:0008319 GO:0030402 -

GO:0000226

microtubule cytoskeleton organization

Details: 
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
GO Category: 
BP

GO:0000922

spindle pole

Details: 
Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
GO Category: 
CC

GO:0005815

microtubule organizing center

Details: 
An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
GO Category: 
CC

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0004249

NA

Details: 
NA
GO Category: 
NA

GO:0008133

NA

Details: 
NA
GO Category: 
NA

GO:0008319

NA

Details: 
NA
GO Category: 
NA

GO:0030402

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments