263878 (AOX1_1) ACAD superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263878 chr_12 (AOX1_1) ACAD superfamily 318175 320481 - ACAD superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449398 Thaps263878.2, Thaps263878.1, Thaps263878.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0038

Most Highly Correlated Transcripts

bd951

(bd951) NA
0.9095

bd446

(bd446) HrpA
0.8573

bd758

(bd758) NA
0.8437

bd890

(bd890) NA
0.8342

bd843

(bd843) NA
0.832

bd1757

(bd1757) NA
0.827

bd211

(bd211) Maf_Ham1 superfamily
0.8162

bd529

(bd529) SNF2_N
0.8114

bd950

(bd950) NA
0.8091

bd1893

(bd1893) NA
0.8067

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ACAD superfamily Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA... - 496.081 2.38E-166 17 - 696 superfamily 263927
PLN02443 acyl-coenzyme A oxidase - 496.667 7.91E-166 19 - 720 multi-dom 178062

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19979 PHATRDRAFT_19979 210789 246220 436719 Cre16.g689050.t1.1 AT4G16760.1 556434

KEGG

KEGG description KEGG Pathway
Peroxisome map04146

GO Terms

GO:0003997 GO:0005777 GO:0006635 -

GO:0003997

acyl-CoA oxidase activity

Details: 
Catalysis of the reaction: acyl-CoA + O2 = trans-2,3-dehydroacyl-CoA + hydrogen peroxide.
GO Category: 
MF

GO:0005777

peroxisome

Details: 
A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.
GO Category: 
CC

GO:0006635

fatty acid beta-oxidation

Details: 
A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
GO Category: 
BP

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