268040 HECTc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268040 chr_1 HECTc 1670018 1675440 - HECTc

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0408

Most Highly Correlated Transcripts

24063

COG3899
0.8964

263610

COG3899
0.8929

12836

EEP superfamily
0.8882

22859

hypothetical protein
0.8846

263599

COG3899
0.8831

24035

Peptidase_C19 superfamily
0.875

24618

hypothetical protein
0.8646

8762

SNF2_N
0.864

22688

hypothetical protein
0.863

22265

hypothetical protein
0.8605

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... cl00077 384.994 5.44E-122 960 - 1321 specific 238033
HECTc superfamily HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... - 384.994 5.44E-122 960 - 1321 superfamily 260176
HECTc Domain Homologous to E6-AP Carboxyl Terminus with; E3 ubiquitin-protein ligases. Can bind to E2... - 336.899 8.70E-105 1000 - 1320 multi-dom 214523

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42123 PHATRDRAFT_42123 181283 251020 73670 Cre03.g159200.t1.1 AT3G53090.2 564322

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0004842 GO:0005622 GO:0006464 GO:0006512 -

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

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