26868 (PSA3) proteasome_alpha_type_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26868 chr_1 (PSA3) proteasome_alpha_type_3 2869250 2870316 - proteasome_alpha_type_3

Synonyms

NCBI ID Ensembl Genomes exon ID
7451491 Thaps26868.1, Thaps26868.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

37934

GRX_PICOT_like
0.9495

262525

(PSB5) proteasome_beta_type_5
0.9364

26991

GRX_GRXh_1_2_like
0.9242

516

(RPT5) RPT1
0.9202

40962

(RPN8) PLN03246
0.9197

26706

(PSA7) proteasome_alpha_type_7
0.9174

270222

0.9138

11068

(PSA6) proteasome_alpha_type_6
0.9123

30075

(PSA5) proteasome_alpha_type_5
0.9101

40483

(PSA4) Ntn_hydrolase superfamily
0.8995

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central... cl00467 318.456 1.67E-109 5 - 231 specific 239720
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 318.456 1.67E-109 5 - 231 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 181.342 1.18E-55 6 - 227 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5685 PHATRDRAFT_5685 269490 236214 55830 Cre14.g619550.t1.2 AT2G27020.1 293613

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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