11068 (PSA6) proteasome_alpha_type_6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11068 chr_19a_19 (PSA6) proteasome_alpha_type_6 33307 34051 + proteasome_alpha_type_6

Synonyms

NCBI ID Ensembl Genomes exon ID
7442624 Thaps11068.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0032
 0.47

Most Highly Correlated Transcripts

26706

(PSA7) proteasome_alpha_type_7
0.9429

37118

FeThRed_B
0.94

516

(RPT5) RPT1
0.9234

269624

TIM_phosphate_binding superfamily
0.9215

26868

(PSA3) proteasome_alpha_type_3
0.9123

40483

(PSA4) Ntn_hydrolase superfamily
0.908

33649

(PSB6) proteasome_beta_type_6
0.9067

37861

(RPN3) Rpn3_C
0.9061

35136

NA
0.9053

264377

(PSB7) proteasome_beta_type_7
0.9005

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central... cl00467 327.269 2.14E-113 7 - 219 specific 239723
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 327.269 2.14E-113 7 - 219 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 191.357 6.46E-60 7 - 244 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_53939 PHATRDRAFT_53939 267879 261904 446206 Cre17.g705400.t1.2 AT2G05840.1 285915

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004298 GO:0005839 GO:0006511 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004299

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments