269937 M1_APN_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269937 chr_18 M1_APN_2 276279 279188 + M1_APN_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7444246 Thaps269937.1, Thaps269937.2, Thaps269937.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0154

Most Highly Correlated Transcripts

270222

0.9519

261400

NA
0.9209

270017

2OG-FeII_Oxy_3 superfamily
0.9203

36494

NBD_sugar-kinase_HSP70_actin superfamily
0.9195

26212

(COP2) COG5096
0.9184

2593

ANK
0.917

37838

M32_Taq
0.9152

16295

FBPase
0.9027

7546

COG1505
0.9024

21420

hypothetical protein
0.9008

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
M1_APN_2 Peptidase M1 Aminopeptidase N family incudes tricorn interacting factor F3, Endoplasmic reticulum... cl14813 611.876 0 2 - 402 specific 189008
GluZincin superfamily Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4... - 611.876 0 2 - 402 superfamily 265459
ERAP1_C superfamily ERAP1-like C-terminal domain; This large domain is composed of 16 alpha helices organized as 8 HEAT... - 243.758 4.09E-73 477 - 799 superfamily 256661
ERAP1_C superfamily ERAP1-like C-terminal domain; This large domain is composed of 16 alpha helices organized as 8 HEAT... - 243.758 4.09E-73 477 - 799 superfamily 256661
PepN Aminopeptidase N [Amino acid transport and metabolism] - 474.659 6.56E-154 3 - 810 multi-dom 223385

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29758 PHATRDRAFT_29758 182429 Not available Not available Cre02.g076200.t1.1 AT4G33090.1 347580

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004179 GO:0006508 GO:0008237 GO:0008270 GO:0016285 -

GO:0004179

NA

Details: 
NA
GO Category: 
NA

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016285

NA

Details: 
NA
GO Category: 
NA

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