26212 (COP2) COG5096
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26212 chr_4 (COP2) COG5096 1843171 1846355 + COG5096

Synonyms

NCBI ID Ensembl Genomes exon ID
7451947 Thaps26212.3, Thaps26212.2, Thaps26212.4, Thaps26212.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0030

Most Highly Correlated Transcripts

269663

(COP4) SEC21
0.9412

23169

hypothetical protein
0.9329

36372

S_TKc
0.9298

36494

NBD_sugar-kinase_HSP70_actin superfamily
0.9269

264492

Peptidase_C1A
0.9238

bd392

(bd392) DEXDc
0.9215

269937

M1_APN_2
0.9184

21420

hypothetical protein
0.9139

24233

DUF1620
0.9127

264556

FBPase
0.9126

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Coatamer_beta_C superfamily Coatomer beta C-terminal region; This family is found at the C-terminus of the coatamer beta... - 244.432 8.49E-76 565 - 706 superfamily 254382
Coatamer_beta_C superfamily Coatomer beta C-terminal region; This family is found at the C-terminus of the coatamer beta... - 244.432 8.49E-76 565 - 706 superfamily 254382
Coatomer_b_Cpla superfamily Coatomer beta subunit appendage platform; This family is found at the C-terminus of the coatamer... - 235.612 8.67E-73 708 - 838 superfamily 258943
Coatomer_b_Cpla superfamily Coatomer beta subunit appendage platform; This family is found at the C-terminus of the coatamer... - 235.612 8.67E-73 708 - 838 superfamily 258943
COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] - 304.729 1.11E-90 2 - 814 multi-dom 227427

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54511 PHATRDRAFT_54511 169344 254613 464820 Cre04.g217921.t1.1 AT4G31490.1 263776

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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