28326 lytB_ispHThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
28326	chr_5	lytB_ispH	1227477	1228738	-	lytB_ispH

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps28326.2, Thaps28326.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0023

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0127	0.38	0.02 2.2

Most Highly Correlated Transcripts

6200 hypothetical protein 0.9329	270376 hypothetical protein 0.926	3463 hypothetical protein 0.9157	1599 hypothetical protein 0.9114	4710 KefB 0.9099	9485 mTERF superfamily 0.9064
268324 60KD_IMP 0.9051	4876 hypothetical protein 0.9016	9513 hypothetical protein 0.9	1219 PAP_fibrillin superfamily 0.8999

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
lytB_ispH		4-hydroxy-3-methylbut-2-enyl diphosphate reductase; The 4-hydroxy-3-methylbut-2-enyl diphosphate (...	cl19123	285.844	2.56E-94	27 - 371	specific	260116
lytB_ispH superfamily		4-hydroxy-3-methylbut-2-enyl diphosphate reductase; The 4-hydroxy-3-methylbut-2-enyl diphosphate (...	-	285.844	2.56E-94	27 - 371	superfamily	267476

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_41845	PHATRDRAFT_41845	175810	263558	112566	Cre08.g372950.t1.2	AT4G34350.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0019288 -

Add comment

Log in to post comments