32339 Spt4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32339 chr_2 Spt4 202536 203309 - Spt4

Synonyms

NCBI ID Ensembl Genomes exon ID
7452176 Thaps32339.3, Thaps32339.2, Thaps32339.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0427

Most Highly Correlated Transcripts

35136

NA
0.9152

37118

FeThRed_B
0.9148

263665

(RT17) rpsQ
0.8884

261607

IF4E
0.8874

37497

cysE
0.8859

32843

hypothetical protein
0.8854

8937

hypothetical protein
0.8845

40200

TRX_reduct
0.8814

plastid_psb28

0.88

3693

SWIB
0.8793

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Spt4 Transcription elongation factor Spt4; Spt4 is a transcription elongation factor. Three... cl12033 151.237 1.26E-47 39 - 135 specific 153422
Spt4 superfamily Transcription elongation factor Spt4; Spt4 is a transcription elongation factor. Three... - 151.237 1.26E-47 39 - 135 superfamily 264517

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27082 PHATRDRAFT_27082 222521 311932 225177 Cre02.g116300.t1.2 AT5G63670.1 353836

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005634 GO:0008159 GO:0008270 GO:0045941 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0008159

NA

Details: 
NA
GO Category: 
NA

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0045941

NA

Details: 
NA
GO Category: 
NA

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