37441 SYS1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37441	chr_14	SYS1 superfamily	497268	497953	-	SYS1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451237	Thaps37441.1, Thaps37441.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0086

Most Highly Correlated Transcripts

22673 NA 0.9121	260829 GalK 0.8982	25068 hypothetical protein 0.8904	37118 FeThRed_B 0.8877	32843 hypothetical protein 0.8829	18462 EMP24_GP25L 0.8824
36481 UAA 0.8792	262513 (RPA2_2) RFA2 0.8784	20587 hypothetical protein 0.8769	268078 MFS_1 0.8766

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SYS1 superfamily		Integral membrane protein S linking to the trans Golgi network; Members of this family are integral...	-	120.024	3.22E-34	56 - 192	superfamily	192384

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_33394	PHATR_33394	197215	299945	62169	Cre10.g423950.t1.2	AT1G79990.4	310251

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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