262513 (RPA2_2) RFA2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262513 chr_5 (RPA2_2) RFA2 1098909 1099867 + RFA2

Synonyms

NCBI ID Ensembl Genomes exon ID
7449647 Thaps262513.1, Thaps262513.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0078
 0.42

Most Highly Correlated Transcripts

bd624

(bd624) Glyco_transf_34 superfamily
0.9327

bd718

(bd718) PRK10387
0.9277

bd1161

(bd1161) NA
0.9183

261211

FGE-sulfatase superfamily
0.9022

bd1765

(bd1765) NA
0.8984

32223

Rab18
0.8975

bd218

(bd218) Chloroa_b-bind superfamily
0.8952

23058

MPP_superfamily superfamily
0.8945

36481

UAA
0.8864

2946

UMP_CMP_kin_fam
0.8827

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding... cl09930 91.5069 3.37E-23 77 - 174 specific 239924
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 91.5069 3.37E-23 77 - 174 superfamily 263924
RPA_C superfamily Replication protein A C terminal; This domain corresponds to the C terminal of the single stranded... - 67.3565 1.59E-14 201 - 284 superfamily 255034
RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication,... - 103.9 3.04E-26 16 - 286 multi-dom 227560

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_32940 PHATRDRAFT_32940 278373 252815 55791 Cre02.g100000.t1.2 AT2G24490.2 535287

KEGG

KEGG description KEGG Pathway
Homologous recombination map03440

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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