42365 Smc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42365 chr_14 Smc 354815 359326 - Smc

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0292
 0.20

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9591

bd1983

(bd1983) RecA-like_NTPases superfamily
0.949

1422

Cnd3
0.9425

4688

hypothetical protein
0.9416

23012

hypothetical protein
0.9397

bd950

(bd950) NA
0.9371

4808

hypothetical protein
0.9362

7586

MAP65_ASE1
0.9264

10832

hypothetical protein
0.9245

33979

S_TKc
0.9238

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC4_euk ATP-binding cassette domain of eukaryotic SMC4 proteins; The structural maintenance of chromosomes... cl17201 241.816 1.43E-72 1134 - 1228 specific 213241
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 194.052 9.98E-56 1 - 164 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 194.052 9.98E-56 1 - 164 superfamily 266551
SMC_hinge SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... cl05797 107.762 7.36E-27 540 - 651 specific 253749
SMC_hinge superfamily SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... - 107.762 7.36E-27 540 - 651 superfamily 262671
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 525.819 5.79E-165 1 - 1231 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_44165 PHATR_44165 212991 Not available 257643 Cre12.g493400.t1.1 AT5G48600.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0005524 GO:0005694 GO:0051276 GO:0016887 GO:0005515 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005694

chromosome

Details: 
A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO Category: 
CC

GO:0051276

chromosome organization

Details: 
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.
GO Category: 
BP

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

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