bd439 (bd439) POLBc_alpha
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd439 bd_19x4 (bd439) POLBc_alpha 26470 30023 + POLBc_alpha

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0058

Most Highly Correlated Transcripts

8536

CDC6
0.9904

36441

CYCLIN
0.9897

5431

hypothetical protein
0.9852

36522

(TOP2) PLN03128
0.9813

2085

hypothetical protein
0.98

31569

(TUB3) PLN00220
0.9784

5867

CDC6
0.978

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9762

21159

hypothetical protein
0.9753

7092

DOMON_DOH
0.975

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain. Three DNA-dependent DNA polymerases type B... cl10023 645.788 0 498 - 917 specific 99915
POLBc superfamily DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding... - 645.788 0 498 - 917 superfamily 245235
DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a... cl10012 233.274 1.33E-69 205 - 439 specific 99819
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 233.274 1.33E-69 205 - 439 superfamily 263941
zf-DNA_Pol superfamily DNA Polymerase alpha zinc finger; The DNA Polymerase alpha zinc finger domain adopts an alpha-helix... - 164.368 8.48E-46 943 - 1133 superfamily 255137
DNA_pol_B DNA polymerase family B; This region of DNA polymerase B appears to consist of more than one... - 401.687 5.00E-128 456 - 921 multi-dom 249619
DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain; This domain has 3' to 5' exonuclease... - 116.772 3.83E-28 37 - 380 multi-dom 251733

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1073 PHATRDRAFT_bd1073 135771 322530 457170 Cre04.g214350.t1.1 AT5G67100.1 496258

KEGG

KEGG description KEGG Pathway
DNA replication map03030

GO Terms

Not available -

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