Phatr_bicluster_0006 Residual: 0.56
Phaeodactylum tricornutum

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Phatr_bicluster_0006 0.56 Phaeodactylum tricornutum
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Displaying 1 - 70 of 70
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PHATRDRAFT_14945 v-typec subunit family protein (ATP-synt_C superfamily)

PHATRDRAFT_14544 - v-typec subunit family protein (ATP-synt_C superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_14544
PHATRDRAFT_15692 golgi membrane protein sb140 isoform 1 (YIP1 superfamily)

PHATRDRAFT_14945 - golgi membrane protein sb140 isoform 1 (YIP1 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_14945
PHATRDRAFT_16442 ormdl family protein (ORMDL superfamily)

PHATRDRAFT_15692 - ormdl family protein (ORMDL superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_15692
PHATRDRAFT_16571 vacuolar type h+-atpase proteolipid subunit (ATP-synt_C superfamily)

PHATRDRAFT_16442 - vacuolar type h+-atpase proteolipid subunit (ATP-synt_C superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_16442
PHATRDRAFT_16719 phosphoglucomutase 2 (PGM2)

PHATRDRAFT_16571 - phosphoglucomutase 2 (PGM2)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_16571
PHATRDRAFT_16854 hcf101 (high-chlorophyll-fluorescence 101) atp binding (MRP-like)

PHATRDRAFT_16719 - hcf101 (high-chlorophyll-fluorescence 101) atp binding (MRP-like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_16719
PHATRDRAFT_19329 potential glutaredoxin (GRX_GRXh_1_2_like)

PHATRDRAFT_16854 - potential glutaredoxin (GRX_GRXh_1_2_like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_16854
PHATRDRAFT_21207 (PLN02820)

PHATRDRAFT_19329 - (PLN02820)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_19329
PHATRDRAFT_22398 abc1 family protein (AarF)

PHATRDRAFT_21207 - abc1 family protein (AarF)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_21207
PHATRDRAFT_22677 lactation elevated 1 (AAA superfamily)

PHATRDRAFT_22398 - lactation elevated 1 (AAA superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_22398
PHATRDRAFT_2966 degenerative spermatocyte homolog 1 (PLN02579)

PHATRDRAFT_22677 - degenerative spermatocyte homolog 1 (PLN02579)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_22677
PHATRDRAFT_34419 aminotransferase class v (PLN02651)

PHATRDRAFT_2966 - aminotransferase class v (PLN02651)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_2966
PHATRDRAFT_34555

PHATRDRAFT_34419 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_34419
PHATRDRAFT_37393

PHATRDRAFT_34555 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_34555
PHATRDRAFT_38754 loc496288 protein

PHATRDRAFT_37393 - loc496288 protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37393
PHATRDRAFT_38803

PHATRDRAFT_37452 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37452
PHATRDRAFT_38948 (DUF92 superfamily)

PHATRDRAFT_38754 - (DUF92 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38754
PHATRDRAFT_39217

PHATRDRAFT_38803 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38803
PHATRDRAFT_40043

PHATRDRAFT_38948 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38948
PHATRDRAFT_40174 subfamilymember 5 (DnaJ)

PHATRDRAFT_39217 - subfamilymember 5 (DnaJ)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39217
PHATRDRAFT_40535

PHATRDRAFT_40043 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40043
PHATRDRAFT_40830 (LRR_RI superfamily)

PHATRDRAFT_40174 - (LRR_RI superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40174
PHATRDRAFT_40841

PHATRDRAFT_40535 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40535
PHATRDRAFT_40942

PHATRDRAFT_40830 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40830
PHATRDRAFT_40956 gtp-binding nuclear protein ran (PTZ00132)

PHATRDRAFT_40841 - gtp-binding nuclear protein ran (PTZ00132)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40841
PHATRDRAFT_40988 cgi-122 protein (GINS_A_psf2)

PHATRDRAFT_40942 - cgi-122 protein (GINS_A_psf2)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40942
PHATRDRAFT_41125 chaperonin containingsubunit 8isoform 5 (TCP1_theta)

PHATRDRAFT_40956 - chaperonin containingsubunit 8isoform 5 (TCP1_theta)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40956
PHATRDRAFT_41541 enoyl-hydratase isomerase (PRK07509)

PHATRDRAFT_40988 - enoyl-hydratase isomerase (PRK07509)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_40988
PHATRDRAFT_41766

PHATRDRAFT_41125 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41125
PHATRDRAFT_42461

PHATRDRAFT_41541 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41541
PHATRDRAFT_42828 glutathione s-transferase domain protein (ECM4)

PHATRDRAFT_41766 - glutathione s-transferase domain protein (ECM4)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41766
PHATRDRAFT_43814

PHATRDRAFT_42461 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_42461
PHATRDRAFT_44152 rna recognition(or rnp) domain containing protein (RRM_SF superfamily)

PHATRDRAFT_42828 - rna recognition(or rnp) domain containing protein (RRM_SF superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_42828
PHATRDRAFT_44195

PHATRDRAFT_43814 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_43814
PHATRDRAFT_44420

PHATRDRAFT_44152 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44152
PHATRDRAFT_44665

PHATRDRAFT_44195 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44195
PHATRDRAFT_45778

PHATRDRAFT_44420 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44420
PHATRDRAFT_4593 major facilitator family transporter (MFS_1)

PHATRDRAFT_44665 - major facilitator family transporter (MFS_1)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44665
PHATRDRAFT_46447 alpha beta hydrolase fold (Abhydrolase_6)

PHATRDRAFT_45778 - alpha beta hydrolase fold (Abhydrolase_6)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_45778
PHATRDRAFT_47042 hcf101 (high-chlorophyll-fluorescence 101) atp binding (MRP-like)

PHATRDRAFT_4593 - hcf101 (high-chlorophyll-fluorescence 101) atp binding (MRP-like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_4593
PHATRDRAFT_47432 kda class i heat shock protein (ACD_sHsps-like)

PHATRDRAFT_46447 - kda class i heat shock protein (ACD_sHsps-like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46447
PHATRDRAFT_47783

PHATRDRAFT_47042 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47042
PHATRDRAFT_48041 riboflavin-specific deaminase-like protein (RibD)

PHATRDRAFT_47432 - riboflavin-specific deaminase-like protein (RibD)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47432
PHATRDRAFT_48151

PHATRDRAFT_47783 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47783
PHATRDRAFT_48183

PHATRDRAFT_48041 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48041
PHATRDRAFT_48208 metacaspase (Peptidase_C14)

PHATRDRAFT_48151 - metacaspase (Peptidase_C14)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48151
PHATRDRAFT_48280

PHATRDRAFT_48183 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48183
PHATRDRAFT_48314

PHATRDRAFT_48208 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48208
PHATRDRAFT_48660 (PDZ superfamily)

PHATRDRAFT_48280 - (PDZ superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48280
PHATRDRAFT_48827

PHATRDRAFT_48314 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48314
PHATRDRAFT_48855 (Cyt_b561_FRRS1_like)

PHATRDRAFT_48660 - (Cyt_b561_FRRS1_like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48660
PHATRDRAFT_49117

PHATRDRAFT_48827 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48827
PHATRDRAFT_49564 nucleolar protein 9 (COG1341)

PHATRDRAFT_48855 - nucleolar protein 9 (COG1341)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48855
PHATRDRAFT_49750 ankyrin unc44 (ANK)

PHATRDRAFT_49117 - ankyrin unc44 (ANK)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49117
PHATRDRAFT_49763

PHATRDRAFT_49564 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49564
PHATRDRAFT_49857

PHATRDRAFT_49750 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49750
PHATRDRAFT_49932 helicase domain protein (HA)

PHATRDRAFT_49763 - helicase domain protein (HA)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49763
PHATRDRAFT_50047 (CIA30 superfamily)

PHATRDRAFT_49857 - (CIA30 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49857
PHATRDRAFT_50216 protein phosphataseregulatory subunit 1

PHATRDRAFT_49932 - protein phosphataseregulatory subunit 1

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49932
PHATRDRAFT_50343

PHATRDRAFT_50047 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50047
PHATRDRAFT_5043 serine incorporatorisoform cra_a (Serinc superfamily)

PHATRDRAFT_50216 - serine incorporatorisoform cra_a (Serinc superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50216
PHATRDRAFT_50562 astacin-like protein (PLN00052)

PHATRDRAFT_50343 - astacin-like protein (PLN00052)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50343
PHATRDRAFT_50572 ubiquitin-activating enzyme e1 1 (E1_enzyme_family superfamily)

PHATRDRAFT_5043 - ubiquitin-activating enzyme e1 1 (E1_enzyme_family superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_5043
PHATRDRAFT_5104

PHATRDRAFT_50562 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50562
PHATRDRAFT_54940

PHATRDRAFT_50572 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50572
PHATRDRAFT_5537 er lumen protein retaining receptor (ER_lumen_recept)

PHATRDRAFT_5104 - er lumen protein retaining receptor (ER_lumen_recept)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_5104
PHATRDRAFT_5629 membrane protein (Cyt_b561_FRRS1_like)

PHATRDRAFT_54940 - membrane protein (Cyt_b561_FRRS1_like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_54940
PHATRDRAFT_8772 principal rna polymerase sigma factor (Sigma70_r2)

PHATRDRAFT_5537 - principal rna polymerase sigma factor (Sigma70_r2)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_5537

PHATRDRAFT_5629 - phosphoglycerate mutase (HP_PGM_like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_5629

PHATRDRAFT_8772 - 2-epi-5-epi-valiolone synthase (DHQ_Fe-ADH superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_8772
GO ID Go Term p-value q-value Cluster
GO:0006636 fatty acid desaturation 0.0671124 1 Phatr_bicluster_0006
GO:0006352 transcription initiation 0.0800035 1 Phatr_bicluster_0006
GO:0006725 aromatic compound metabolism 0.129871 1 Phatr_bicluster_0006
GO:0007264 small GTPase mediated signal transduction 0.135918 1 Phatr_bicluster_0006
GO:0008152 metabolism 0.141335 1 Phatr_bicluster_0006
GO:0000160 two-component signal transduction system (phosphorelay) 0.165551 1 Phatr_bicluster_0006
GO:0006260 DNA replication 0.165551 1 Phatr_bicluster_0006
GO:0006096 glycolysis 0.216438 1 Phatr_bicluster_0006
GO:0006886 intracellular protein transport 0.243402 1 Phatr_bicluster_0006
GO:0005975 carbohydrate metabolism 0.356331 1 Phatr_bicluster_0006
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