Thaps_bicluster_0038 Residual: 0.59
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0038 0.59 Thalassiosira pseudonana
Displaying 1 - 45 of 45
10724 Ank_2

10724 - Ank_2

GO Terms:

NA

CD Domains:

Go To Gene Page:

10724
10744 hypothetical protein

10744 - hypothetical protein

GO Terms:

GO:0003677, GO:0006306, GO:0008170, GO:0004812, GO:0005524, GO:0006418

CD Domains:

Go To Gene Page:

10744
11283 hypothetical protein

11283 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11283
11951 NADB_Rossmann superfamily

11951 - NADB_Rossmann superfamily

GO Terms:

GO:0008152, GO:0016491, GO:0004090

CD Domains:

Go To Gene Page:

11951
12035 hypothetical protein

12035 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12035
1294 hypothetical protein

1294 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1294
14563 (PF2K1) AAA_17 superfamily

14563 - (PF2K1) AAA_17 superfamily

GO Terms:

GO:0003824, GO:0008152, GO:0005524, GO:0006003, GO:0004331

CD Domains:

Go To Gene Page:

14563
2240 hypothetical protein

2240 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2240
23025 (RPL1) Ribosomal_L1

23025 - (RPL1) Ribosomal_L1

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006412

CD Domains:

Go To Gene Page:

23025
24226 hypothetical protein

24226 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24226
24416 hypothetical protein

24416 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24416
24791 hypothetical protein

24791 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24791
24813 hypothetical protein

24813 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24813
24936 Transglut_core

24936 - Transglut_core

GO Terms:

GO:0006508, GO:0008237, GO:0008270, GO:0031177

CD Domains:

Go To Gene Page:

24936
24963 hypothetical protein

24963 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24963
25918 Porin3 superfamily

25918 - Porin3 superfamily

GO Terms:

GO:0005741, GO:0006820, GO:0008308

CD Domains:

Go To Gene Page:

25918
260787 hypothetical protein

260787 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

260787
262125 (NIR_2) PLN02431

262125 - (NIR_2) PLN02431

GO Terms:

GO:0006118, GO:0016664, GO:0042128, GO:0048307

CD Domains:

Go To Gene Page:

262125
262179 TTL

262179 - TTL

GO Terms:

GO:0004835, GO:0006464

CD Domains:

Go To Gene Page:

262179
263123 RGS

263123 - RGS

GO Terms:

GO:0004871

CD Domains:

Go To Gene Page:

263123
264583 (PYK4) PykF

264583 - (PYK4) PykF

GO Terms:

GO:0004743, GO:0006096

CD Domains:

Go To Gene Page:

264583
264768 Tim17 superfamily

264768 - Tim17 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

264768
264801

264801 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

264801
268576 DUF2872 superfamily

268576 - DUF2872 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

268576
269194 (Tp_HSF_2.5a) HSF_DNA-bind superfamily

269194 - (Tp_HSF_2.5a) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

269194
27273 MTHFR

27273 - MTHFR

GO Terms:

GO:0004489, GO:0006555

CD Domains:

Go To Gene Page:

27273
27414 (NRT1) 2A0108

27414 - (NRT1) 2A0108

GO Terms:

GO:0015103, GO:0015698, GO:0016021, GO:0005215, GO:0006810

CD Domains:

Go To Gene Page:

27414
29228 (GcpE) PRK02048

29228 - (GcpE) PRK02048

GO Terms:

GO:0016114, GO:0046429

CD Domains:

Go To Gene Page:

29228
32586 hppA

32586 - hppA

GO Terms:

GO:0004427, GO:0009678, GO:0015992, GO:0016020

CD Domains:

Go To Gene Page:

32586
33407 (Tp_aureochrome4) PAS_9

33407 - (Tp_aureochrome4) PAS_9

GO Terms:

GO:0004871, GO:0007165, GO:0000155, GO:0000160

CD Domains:

Go To Gene Page:

33407
3393 Form_Nir_trans

3393 - Form_Nir_trans

GO Terms:

GO:0005215, GO:0006810, GO:0016020

CD Domains:

Go To Gene Page:

3393
3754 hypothetical protein

3754 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3754
3814 hypothetical protein

3814 - hypothetical protein

GO Terms:

GO:0005488, GO:0006810, GO:0016020

CD Domains:

Go To Gene Page:

3814
38482 hypothetical protein

38482 - hypothetical protein

GO Terms:

GO:0006626, GO:0042721, GO:0045039

CD Domains:

Go To Gene Page:

38482
38925 S1_S28E

38925 - S1_S28E

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006412

CD Domains:

Go To Gene Page:

38925
41829 PTZ00141

41829 - PTZ00141

GO Terms:

GO:0005525, GO:0006412, GO:0003924, GO:0008547

CD Domains:

Go To Gene Page:

41829
4404 hypothetical protein

4404 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

4404
6238 hypothetical protein

6238 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6238
7595 hypothetical protein

7595 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7595
8431 hypothetical protein

8431 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8431
8858 hypothetical protein

8858 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8858
9007 hypothetical protein

9007 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9007
9643 (Tp_bZIP8) regulator [Rayko]

9643 - (Tp_bZIP8) regulator [Rayko]

GO Terms:

GO:0003677, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

9643
ThpsCp074 (psaJ) photosystem I subunit IX

ThpsCp074 - (psaJ) photosystem I subunit IX

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCp074
ThpsCt003 (trnV(uac))

ThpsCt003 - (trnV(uac))

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCt003
GO ID Go Term p-value q-value Cluster
GO:0042128 nitrate assimilation 0.00578871 1 Thaps_bicluster_0038
GO:0006003 fructose 2,6-bisphosphate metabolism 0.0115451 1 Thaps_bicluster_0038
GO:0015698 inorganic anion transport 0.0115451 1 Thaps_bicluster_0038
GO:0006555 methionine metabolism 0.0115451 1 Thaps_bicluster_0038
GO:0045039 mitochondrial inner membrane protein import 0.0229616 1 Thaps_bicluster_0038
GO:0006626 protein-mitochondrial targeting 0.0229616 1 Thaps_bicluster_0038
GO:0016114 terpenoid biosynthesis 0.0229616 1 Thaps_bicluster_0038
GO:0006820 anion transport 0.0454144 1 Thaps_bicluster_0038
GO:0006412 protein biosynthesis 0.0694694 1 Thaps_bicluster_0038
GO:0015992 proton transport 0.083515 1 Thaps_bicluster_0038
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