Thaps_bicluster_0047 Residual: 0.45
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0047 0.45 Thalassiosira pseudonana
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Displaying 1 - 48 of 48
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11392 hypothetical protein

11392 - hypothetical protein

GO Terms:

GO:0004402

CD Domains:

Go To Gene Page:

11392
11590 hypothetical protein

11590 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11590
11667 hypothetical protein

11667 - hypothetical protein

GO Terms:

GO:0003700, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

11667
11794 hypothetical protein

11794 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11794
17073 DUF1295 superfamily

17073 - DUF1295 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

17073
2087 LldP

2087 - LldP

GO Terms:

NA

CD Domains:

Go To Gene Page:

2087
22087 hypothetical protein

22087 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22087
22428 hypothetical protein

22428 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22428
22486 hypothetical protein

22486 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22486
22566 hypothetical protein

22566 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22566
2272 hypothetical protein

2272 - hypothetical protein

GO Terms:

GO:0008757

CD Domains:

Go To Gene Page:

2272
22727 RCC1

22727 - RCC1

GO Terms:

GO:0003676, GO:0005634, GO:0008270, GO:0008766, GO:0016881, GO:0018169

CD Domains:

Go To Gene Page:

22727
22767 TM_PBP1_branched-chain-AA_like superfamily

22767 - TM_PBP1_branched-chain-AA_like superfamily

GO Terms:

GO:0006814, GO:0006885, GO:0015385, GO:0016021

CD Domains:

Go To Gene Page:

22767
23052 CAP_GLY

23052 - CAP_GLY

GO Terms:

NA

CD Domains:

Go To Gene Page:

23052
23208 (Tp_bHLH7_PAS) regulator [Rayko]

23208 - (Tp_bHLH7_PAS) regulator [Rayko]

GO Terms:

GO:0004871, GO:0007165

CD Domains:

Go To Gene Page:

23208
23528 Rab11_like

23528 - Rab11_like

GO Terms:

GO:0005525, GO:0007264, GO:0006886, GO:0000160, GO:0003677, GO:0006355, GO:0015031, GO:0003924, GO:0003925

CD Domains:

Go To Gene Page:

23528
24488 hypothetical protein

24488 - hypothetical protein

GO Terms:

GO:0004845

CD Domains:

Go To Gene Page:

24488
24542 hypothetical protein

24542 - hypothetical protein

GO Terms:

GO:0016787

CD Domains:

Go To Gene Page:

24542
24599 hypothetical protein

24599 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24599
25164 hypothetical protein

25164 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25164
25199 hypothetical protein

25199 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25199
25346 hypothetical protein

25346 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25346
261387 ATP11 superfamily

261387 - ATP11 superfamily

GO Terms:

GO:0005739, GO:0006461

CD Domains:

Go To Gene Page:

261387
268461 COG2423

268461 - COG2423

GO Terms:

GO:0008473

CD Domains:

Go To Gene Page:

268461
270288 hypothetical protein

270288 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270288
270367 hypothetical protein

270367 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270367
2957 hypothetical protein

2957 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2957
29789 hypothetical protein

29789 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

29789
3408 FANCL_C superfamily

3408 - FANCL_C superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

3408
3688 hypothetical protein

3688 - hypothetical protein

GO Terms:

GO:0005215, GO:0006810, GO:0016021

CD Domains:

Go To Gene Page:

3688
3707 PUB

3707 - PUB

GO Terms:

NA

CD Domains:

Go To Gene Page:

3707
3956 FUN14

3956 - FUN14

GO Terms:

NA

CD Domains:

Go To Gene Page:

3956
40580 Ras_like_GTPase superfamily

40580 - Ras_like_GTPase superfamily

GO Terms:

GO:0005525, GO:0007264, GO:0015031

CD Domains:

Go To Gene Page:

40580
4096 hypothetical protein

4096 - hypothetical protein

GO Terms:

GO:0008152, GO:0016787, GO:0003824

CD Domains:

Go To Gene Page:

4096
4760 pro_imino_pep_2

4760 - pro_imino_pep_2

GO Terms:

GO:0003824, GO:0004177, GO:0006508

CD Domains:

Go To Gene Page:

4760
5090 hypothetical protein

5090 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5090
5308 hypothetical protein

5308 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5308
5952 DUF179

5952 - DUF179

GO Terms:

NA

CD Domains:

Go To Gene Page:

5952
6551 hypothetical protein

6551 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6551
6639 hypothetical protein

6639 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6639
6949 Peptidase_S41_CPP

6949 - Peptidase_S41_CPP

GO Terms:

GO:0005515, GO:0006508, GO:0008236

CD Domains:

Go To Gene Page:

6949
7607 Methyltransf_31

7607 - Methyltransf_31

GO Terms:

GO:0008757, GO:0008168, GO:0030791

CD Domains:

Go To Gene Page:

7607
7987 hypothetical protein

7987 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7987
8811 RPE65 superfamily

8811 - RPE65 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

8811
924 MIP superfamily

924 - MIP superfamily

GO Terms:

GO:0005215, GO:0006810, GO:0016020

CD Domains:

Go To Gene Page:

924
9522 hypothetical protein

9522 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9522
9529 hypothetical protein

9529 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9529
9695 Cupin_8 superfamily

9695 - Cupin_8 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

9695
GO ID Go Term p-value q-value Cluster
GO:0006461 protein complex assembly 0.0243591 1 Thaps_bicluster_0047
GO:0006814 sodium ion transport 0.0380267 1 Thaps_bicluster_0047
GO:0000160 two-component signal transduction system (phosphorelay) 0.0909158 1 Thaps_bicluster_0047
GO:0007165 signal transduction 0.13186 1 Thaps_bicluster_0047
GO:0006810 transport 0.134855 1 Thaps_bicluster_0047
GO:0006886 intracellular protein transport 0.17401 1 Thaps_bicluster_0047
GO:0006508 proteolysis and peptidolysis 0.268722 1 Thaps_bicluster_0047
GO:0006355 regulation of transcription, DNA-dependent 0.294119 1 Thaps_bicluster_0047
GO:0008152 metabolism 0.776156 1 Thaps_bicluster_0047
GO:0007264 small GTPase mediated signal transduction 0.00610582 1 Thaps_bicluster_0047
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