Thaps_bicluster_0057 Residual: 0.46
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0057 0.46 Thalassiosira pseudonana
Displaying 1 - 37 of 37
10073 hypothetical protein

10073 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10073
10722 Lipase superfamily

10722 - Lipase superfamily

GO Terms:

GO:0004812, GO:0005524, GO:0006418, GO:0004806, GO:0006629

CD Domains:

Go To Gene Page:

10722
10935 Ion_trans

10935 - Ion_trans

GO Terms:

GO:0005267, GO:0006813, GO:0016020, GO:0005249, GO:0005261, GO:0006812, GO:0005216, GO:0006811

CD Domains:

Go To Gene Page:

10935
10983 hypothetical protein

10983 - hypothetical protein

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

10983
12135 hypothetical protein

12135 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12135
1230 hypothetical protein

1230 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

1230
1243 hypothetical protein

1243 - hypothetical protein

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

1243
1436 hypothetical protein

1436 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1436
1755 hypothetical protein

1755 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1755
21058 hypothetical protein

21058 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21058
21583 hypothetical protein

21583 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

21583
21977 hypothetical protein

21977 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21977
22639 hypothetical protein

22639 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22639
23225 hypothetical protein

23225 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23225
23755 hypothetical protein

23755 - hypothetical protein

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

23755
24466 hypothetical protein

24466 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24466
24535 MDR8

24535 - MDR8

GO Terms:

GO:0008270, GO:0016491

CD Domains:

Go To Gene Page:

24535
24636 hypothetical protein

24636 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24636
2530 hypothetical protein

2530 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2530
260761 HA

260761 - HA

GO Terms:

NA

CD Domains:

Go To Gene Page:

260761
263035 HP_PGM_like

263035 - HP_PGM_like

GO Terms:

GO:0003824, GO:0008152, GO:0006096, GO:0016868, GO:0004619, GO:0046537, GO:0046538

CD Domains:

Go To Gene Page:

263035
268362 (Tp_AP2-EREBP2) regulator [Rayko]

268362 - (Tp_AP2-EREBP2) regulator [Rayko]

GO Terms:

GO:0003700, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

268362
268958 hypothetical protein

268958 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268958
34855 Abhydrolase_5

34855 - Abhydrolase_5

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

34855
37123 (VAT2) V-ATPase_V1_A

37123 - (VAT2) V-ATPase_V1_A

GO Terms:

GO:0005524, GO:0015986, GO:0016469, GO:0046933, GO:0046961, GO:0006754, GO:0003936

CD Domains:

Go To Gene Page:

37123
37592 S_TKc

37592 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

37592
4095 hypothetical protein

4095 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4095
4167 hypothetical protein

4167 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4167
4659 hypothetical protein

4659 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

4659
4800 hypothetical protein

4800 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4800
4946 hypothetical protein

4946 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4946
5479 hypothetical protein

5479 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5479
7895 hypothetical protein

7895 - hypothetical protein

GO Terms:

GO:0003700, GO:0006355, GO:0003755, GO:0004600, GO:0030051, GO:0042027

CD Domains:

Go To Gene Page:

7895
8232 hypothetical protein

8232 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8232
9092 hypothetical protein

9092 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9092
9221 hypothetical protein

9221 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9221
9558 hypothetical protein

9558 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9558
GO ID Go Term p-value q-value Cluster
GO:0006754 ATP biosynthesis 0.0123506 1 Thaps_bicluster_0057
GO:0006412 translation 0.0426071 1 Thaps_bicluster_0057
GO:0006811 ion transport 0.0544657 1 Thaps_bicluster_0057
GO:0006813 potassium ion transport 0.066187 1 Thaps_bicluster_0057
GO:0006629 lipid metabolism 0.0863737 1 Thaps_bicluster_0057
GO:0006096 glycolysis 0.108945 1 Thaps_bicluster_0057
GO:0006812 cation transport 0.125531 1 Thaps_bicluster_0057
GO:0015986 ATP synthesis coupled proton transport 0.133715 1 Thaps_bicluster_0057
GO:0006418 tRNA aminoacylation for protein translation 0.163117 1 Thaps_bicluster_0057
GO:0016567 protein ubiquitination 0.219149 1 Thaps_bicluster_0057
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