Thaps_bicluster_0086 Residual: 0.47
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0086 0.47 Thalassiosira pseudonana
Displaying 1 - 41 of 41
10499 hypothetical protein

10499 - hypothetical protein

GO Terms:

GO:0003700, GO:0006355

CD Domains:

Go To Gene Page:

10499
11598 hypothetical protein

11598 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11598
11640 hypothetical protein

11640 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11640
1210 hypothetical protein

1210 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1210
1770 hypothetical protein

1770 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1770
21488 hypothetical protein

21488 - hypothetical protein

GO Terms:

GO:0006355

CD Domains:

Go To Gene Page:

21488
21605 hypothetical protein

21605 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21605
22199 hypothetical protein

22199 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22199
22279 hypothetical protein

22279 - hypothetical protein

GO Terms:

GO:0003677

CD Domains:

Go To Gene Page:

22279
22336 hypothetical protein

22336 - hypothetical protein

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

22336
22365 Abhydrolase_6

22365 - Abhydrolase_6

GO Terms:

GO:0003824, GO:0004177, GO:0006508

CD Domains:

Go To Gene Page:

22365
22772 serine or glycine-rich protein with nucleotide binding motif

22772 - serine or glycine-rich protein with nucleotide binding motif

GO Terms:

NA

CD Domains:

Go To Gene Page:

22772
22875 hypothetical protein

22875 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22875
23191 hypothetical protein

23191 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23191
24282 hypothetical protein

24282 - hypothetical protein

GO Terms:

GO:0008270, GO:0000285

CD Domains:

Go To Gene Page:

24282
24708 hypothetical protein

24708 - hypothetical protein

GO Terms:

GO:0000786, GO:0003677, GO:0005634, GO:0007001, GO:0007283

CD Domains:

Go To Gene Page:

24708
24816 (ASA) PRK05425

24816 - (ASA) PRK05425

GO Terms:

GO:0004071, GO:0005737, GO:0006529, GO:0004812, GO:0005524, GO:0006418

CD Domains:

Go To Gene Page:

24816
25049 hypothetical protein

25049 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

25049
25188 hypothetical protein

25188 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25188
25315 hypothetical protein

25315 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25315
25407 hypothetical protein

25407 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25407
25776 hypothetical protein

25776 - hypothetical protein

GO Terms:

GO:0005515, GO:0004842

CD Domains:

Go To Gene Page:

25776
25777 hypothetical protein

25777 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

25777
263371 COG5075

263371 - COG5075

GO Terms:

NA

CD Domains:

Go To Gene Page:

263371
263784 GluZincin superfamily

263784 - GluZincin superfamily

GO Terms:

GO:0004222, GO:0006508, GO:0008237, GO:0008270, GO:0004243

CD Domains:

Go To Gene Page:

263784
263868 KISc

263868 - KISc

GO Terms:

GO:0003777, GO:0005524, GO:0005875, GO:0007018, GO:0008574

CD Domains:

Go To Gene Page:

263868
270007 Peptidase_C14

270007 - Peptidase_C14

GO Terms:

GO:0006508, GO:0030693

CD Domains:

Go To Gene Page:

270007
30919 Longin

30919 - Longin

GO Terms:

GO:0016021, GO:0016192

CD Domains:

Go To Gene Page:

30919
32557 hypothetical protein

32557 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

32557
35103 DLP_1

35103 - DLP_1

GO Terms:

GO:0003924, GO:0005525

CD Domains:

Go To Gene Page:

35103
38110 P4Hc

38110 - P4Hc

GO Terms:

GO:0016706, GO:0019538, GO:0004656, GO:0016222

CD Domains:

Go To Gene Page:

38110
4308 hypothetical protein

4308 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4308
5136 hypothetical protein

5136 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5136
5204 hypothetical protein

5204 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5204
6224 hypothetical protein

6224 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6224
7652 hypothetical protein

7652 - hypothetical protein

GO Terms:

GO:0016020

CD Domains:

Go To Gene Page:

7652
7890 HORMA

7890 - HORMA

GO Terms:

NA

CD Domains:

Go To Gene Page:

7890
8238 hypothetical protein

8238 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8238
8686 hypothetical protein

8686 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8686
9874 hypothetical protein

9874 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9874
GO ID Go Term p-value q-value Cluster
GO:0006030 chitin metabolic process 0.00866511 1 Thaps_bicluster_0086
GO:0006529 asparagine biosynthesis 0.00866511 1 Thaps_bicluster_0086
GO:0007283 spermatogenesis 0.00866511 1 Thaps_bicluster_0086
GO:0005975 carbohydrate metabolic process 0.0215288 1 Thaps_bicluster_0086
GO:0016310 phosphorylation 0.0550594 1 Thaps_bicluster_0086
GO:0016192 vesicle-mediated transport 0.067349 1 Thaps_bicluster_0086
GO:0000160 two-component signal transduction system (phosphorelay) 0.111121 1 Thaps_bicluster_0086
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota) 0.118866 1 Thaps_bicluster_0086
GO:0006508 proteolysis and peptidolysis 0.125896 1 Thaps_bicluster_0086
GO:0006355 regulation of transcription, DNA-dependent 0.144823 1 Thaps_bicluster_0086
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