Thaps_bicluster_0153 Residual: 0.31
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0153 0.31 Thalassiosira pseudonana
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Displaying 1 - 23 of 23
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20974 hypothetical protein

20974 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20974
21333 Reprolysin_3

21333 - Reprolysin_3

GO Terms:

GO:0004222, GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

21333
21438 hypothetical protein

21438 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21438
22215 hypothetical protein

22215 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

22215
22708 hypothetical protein

22708 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

22708
23314 hypothetical protein

23314 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23314
23419 M6dom_TIGR03296

23419 - M6dom_TIGR03296

GO Terms:

GO:0005507, GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

23419
23521 hypothetical protein

23521 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23521
23933 hypothetical protein

23933 - hypothetical protein

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

23933
23947 hypothetical protein

23947 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23947
23949 hypothetical protein

23949 - hypothetical protein

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

23949
262247 (CHT2) Glyco_18

262247 - (CHT2) Glyco_18

GO Terms:

GO:0008152, GO:0016787, GO:0003824, GO:0005975, GO:0004568, GO:0008843

CD Domains:

Go To Gene Page:

262247
263096 lysozyme_like superfamily

263096 - lysozyme_like superfamily

GO Terms:

GO:0004568, GO:0006032, GO:0009613, GO:0016998

CD Domains:

Go To Gene Page:

263096
269264 hypothetical protein

269264 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

269264
2693 hypothetical protein

2693 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2693
32693 hypothetical protein

32693 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

32693
34418 Phytochelatin

34418 - Phytochelatin

GO Terms:

NA

CD Domains:

Go To Gene Page:

34418
4193 hypothetical protein

4193 - hypothetical protein

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

4193
6273 LRR_RI superfamily

6273 - LRR_RI superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

6273
6424 hypothetical protein

6424 - hypothetical protein

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

6424
6750 hypothetical protein

6750 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6750
7333 hypothetical protein

7333 - hypothetical protein

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

7333
9406 hypothetical protein

9406 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9406
GO ID Go Term p-value q-value Cluster
GO:0006030 chitin metabolism 0.0000114 0.0314097 Thaps_bicluster_0153
GO:0008152 metabolism 0.620117 1 Thaps_bicluster_0153
GO:0006032 chitin catabolism 0.0180619 1 Thaps_bicluster_0153
GO:0016998 cell wall catabolism 0.0202987 1 Thaps_bicluster_0153
GO:0009613 response to pest, pathogen or parasite 0.0202987 1 Thaps_bicluster_0153
GO:0006508 proteolysis and peptidolysis 0.0241111 1 Thaps_bicluster_0153
GO:0005975 carbohydrate metabolism 0.158085 1 Thaps_bicluster_0153
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