Thaps_bicluster_0169 Residual: 0.34
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0169 0.34 Thalassiosira pseudonana
Displaying 1 - 27 of 27
10102 hypothetical protein

10102 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10102
10280 hypothetical protein

10280 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10280
11506 hypothetical protein

11506 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11506
13134 AarF

13134 - AarF

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

13134
21489 Y_phosphatase3

21489 - Y_phosphatase3

GO Terms:

NA

CD Domains:

Go To Gene Page:

21489
22388 hypothetical protein

22388 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22388
22880 Fasciclin

22880 - Fasciclin

GO Terms:

GO:0007155

CD Domains:

Go To Gene Page:

22880
23931 PLN02244

23931 - PLN02244

GO Terms:

GO:0008757, GO:0050342

CD Domains:

Go To Gene Page:

23931
24285 hypothetical protein

24285 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24285
24555 hypothetical protein

24555 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24555
270329 hypothetical protein

270329 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270329
2790 PLN02291

2790 - PLN02291

GO Terms:

GO:0003849, GO:0009073

CD Domains:

Go To Gene Page:

2790
30895 Aldo_ket_red

30895 - Aldo_ket_red

GO Terms:

GO:0016491, GO:0051341

CD Domains:

Go To Gene Page:

30895
3298 MtN3_slv superfamily

3298 - MtN3_slv superfamily

GO Terms:

GO:0005554, GO:0016020

CD Domains:

Go To Gene Page:

3298
34399 FolD

34399 - FolD

GO Terms:

GO:0003824, GO:0009396

CD Domains:

Go To Gene Page:

34399
3854 hypothetical protein

3854 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3854
39520 hppA

39520 - hppA

GO Terms:

GO:0004427, GO:0009678, GO:0015992, GO:0016020

CD Domains:

Go To Gene Page:

39520
4065 hypothetical protein

4065 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4065
4452 CDC14

4452 - CDC14

GO Terms:

GO:0006470, GO:0008138, GO:0004721

CD Domains:

Go To Gene Page:

4452
4767 hypothetical protein

4767 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4767
5389 hypothetical protein

5389 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5389
6896 Chalcone superfamily

6896 - Chalcone superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

6896
7035 hypothetical protein

7035 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7035
7474 PITH

7474 - PITH

GO Terms:

NA

CD Domains:

Go To Gene Page:

7474
7957 DUF3464

7957 - DUF3464

GO Terms:

NA

CD Domains:

Go To Gene Page:

7957
9394 hypothetical protein

9394 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9394
974 hot_dog superfamily

974 - hot_dog superfamily

GO Terms:

GO:0004197, GO:0006508, GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

974
GO ID Go Term p-value q-value Cluster
GO:0009396 folic acid and derivative biosynthesis 0.0129601 1 Thaps_bicluster_0169
GO:0009073 aromatic amino acid family biosynthesis 0.0129601 1 Thaps_bicluster_0169
GO:0015992 proton transport 0.0275887 1 Thaps_bicluster_0169
GO:0051341 regulation of oxidoreductase activity 0.0420242 1 Thaps_bicluster_0169
GO:0006470 protein amino acid dephosphorylation 0.0473882 1 Thaps_bicluster_0169
GO:0007155 cell adhesion 0.0544987 1 Thaps_bicluster_0169
GO:0006468 protein amino acid phosphorylation 0.333459 1 Thaps_bicluster_0169
GO:0006508 proteolysis and peptidolysis 0.424754 1 Thaps_bicluster_0169
GO:0008152 metabolism 0.546944 1 Thaps_bicluster_0169
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