Thaps_bicluster_0215 Residual: 0.25
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0215 0.25 Thalassiosira pseudonana
Displaying 1 - 17 of 17
11183 hypothetical protein

11183 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11183
23516 hypothetical protein

23516 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23516
25077 hypothetical protein

25077 - hypothetical protein

GO Terms:

GO:0031177

CD Domains:

Go To Gene Page:

25077
262575 DHOD_1A_like

262575 - DHOD_1A_like

GO Terms:

GO:0004152, GO:0006207, GO:0004158

CD Domains:

Go To Gene Page:

262575
264628 UxaC

264628 - UxaC

GO Terms:

NA

CD Domains:

Go To Gene Page:

264628
268773 Gst

268773 - Gst

GO Terms:

GO:0004364

CD Domains:

Go To Gene Page:

268773
2698 hypothetical protein

2698 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2698
3322 hypothetical protein

3322 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3322
33950 TMEM18

33950 - TMEM18

GO Terms:

NA

CD Domains:

Go To Gene Page:

33950
34684 Trypsin_2

34684 - Trypsin_2

GO Terms:

GO:0004295, GO:0006508, GO:0005515, GO:0004252, GO:0004289, GO:0008132, GO:0008243, GO:0008991, GO:0016808

CD Domains:

Go To Gene Page:

34684
4292 hypothetical protein

4292 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4292
5098 hypothetical protein

5098 - hypothetical protein

GO Terms:

GO:0016021

CD Domains:

Go To Gene Page:

5098
5872 hypothetical protein

5872 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5872
5971 hypothetical protein

5971 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5971
6757 hypothetical protein

6757 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6757
8824 hypothetical protein

8824 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8824
9795 hypothetical protein

9795 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9795
GO ID Go Term p-value q-value Cluster
GO:0006207 'de novo' pyrimidine base biosynthesis 0.00206654 1 Thaps_bicluster_0215
GO:0006508 proteolysis and peptidolysis 0.115549 1 Thaps_bicluster_0215
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