Thaps_bicluster_0252 Residual: 0.29
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0252 0.29 Thalassiosira pseudonana
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Displaying 1 - 22 of 22
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11089 hypothetical protein

11089 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11089
1594 hypothetical protein

1594 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1594
1904 hypothetical protein

1904 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1904
1931 hypothetical protein

1931 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1931
21016 hypothetical protein

21016 - hypothetical protein

GO Terms:

GO:0008152, GO:0016491, GO:0031177

CD Domains:

Go To Gene Page:

21016
22734 hypothetical protein

22734 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22734
23263 hypothetical protein

23263 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23263
2425 hypothetical protein

2425 - hypothetical protein

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

2425
24569 hypothetical protein

24569 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24569
263271

263271 -

GO Terms:

GO:0005975

CD Domains:

Go To Gene Page:

263271
263852 SUL1

263852 - SUL1

GO Terms:

NA

CD Domains:

Go To Gene Page:

263852
264854 S_TKc

264854 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

264854
3243 hypothetical protein

3243 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3243
4596 hypothetical protein

4596 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4596
4705 hypothetical protein

4705 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4705
5147 ANK

5147 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

5147
5401 hypothetical protein

5401 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5401
6536 hypothetical protein

6536 - hypothetical protein

GO Terms:

GO:0005507, GO:0004672, GO:0004682, GO:0004691, GO:0005952, GO:0005956, GO:0008603, GO:0008605

CD Domains:

Go To Gene Page:

6536
7237 hypothetical protein

7237 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7237
8704 hypothetical protein

8704 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8704
9055 hypothetical protein

9055 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9055
9993 H15

9993 - H15

GO Terms:

GO:0000786, GO:0003677, GO:0005634, GO:0006334, GO:0007001

CD Domains:

Go To Gene Page:

9993
GO ID Go Term p-value q-value Cluster
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota) 0.0296321 1 Thaps_bicluster_0252
GO:0006334 nucleosome assembly 0.0316495 1 Thaps_bicluster_0252
GO:0005975 carbohydrate metabolism 0.0751903 1 Thaps_bicluster_0252
GO:0006468 protein amino acid phosphorylation 0.201698 1 Thaps_bicluster_0252
GO:0008152 metabolism 0.355748 1 Thaps_bicluster_0252
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